Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC26.93■■□□□ 1.9
RXRBP28702 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC26.93■■□□□ 1.9
RXRBP28702 AL031985.4-201ENST00000642138 673 ntBASIC26.93■■□□□ 1.9
RXRBP28702 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC26.93■■□□□ 1.9
RXRBP28702 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC26.93■■□□□ 1.9
RXRBP28702 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC26.93■■□□□ 1.9
RXRBP28702 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC26.93■■□□□ 1.9
RXRBP28702 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
RXRBP28702 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
RXRBP28702 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
RXRBP28702 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
RXRBP28702 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC26.92■■□□□ 1.9
RXRBP28702 SLC25A1P4-201ENST00000567977 778 ntBASIC26.92■■□□□ 1.9
RXRBP28702 RN7SL510P-201ENST00000581311 263 ntBASIC26.92■■□□□ 1.9
RXRBP28702 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
RXRBP28702 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC26.92■■□□□ 1.9
RXRBP28702 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
RXRBP28702 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
RXRBP28702 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
RXRBP28702 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
RXRBP28702 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
RXRBP28702 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC26.91■■□□□ 1.9
RXRBP28702 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RXRBP28702 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC26.91■■□□□ 1.9
RXRBP28702 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RXRBP28702 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC26.91■■□□□ 1.9
RXRBP28702 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC26.91■■□□□ 1.9
RXRBP28702 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC26.91■■□□□ 1.9
RXRBP28702 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC26.91■■□□□ 1.9
RXRBP28702 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RXRBP28702 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
RXRBP28702 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
RXRBP28702 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
RXRBP28702 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
RXRBP28702 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC26.9■■□□□ 1.9
RXRBP28702 CD81-212ENST00000526072 1172 ntTSL 5 BASIC26.9■■□□□ 1.9
RXRBP28702 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
RXRBP28702 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC26.9■■□□□ 1.9
RXRBP28702 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
RXRBP28702 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC26.89■■□□□ 1.9
RXRBP28702 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
RXRBP28702 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC26.89■■□□□ 1.9
RXRBP28702 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC26.89■■□□□ 1.9
RXRBP28702 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
RXRBP28702 AL356652.1-201ENST00000615962 565 ntBASIC26.89■■□□□ 1.9
RXRBP28702 AC011558.1-201ENST00000623459 338 ntBASIC26.89■■□□□ 1.9
RXRBP28702 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC26.89■■□□□ 1.89
RXRBP28702 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
RXRBP28702 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC26.88■■□□□ 1.89
RXRBP28702 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC26.88■■□□□ 1.89
RXRBP28702 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
RXRBP28702 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
RXRBP28702 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC26.88■■□□□ 1.89
RXRBP28702 AL671277.2-201ENST00000458060 996 ntBASIC26.88■■□□□ 1.89
RXRBP28702 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC26.88■■□□□ 1.89
RXRBP28702 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC26.88■■□□□ 1.89
RXRBP28702 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC26.88■■□□□ 1.89
RXRBP28702 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
RXRBP28702 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
RXRBP28702 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC26.87■■□□□ 1.89
RXRBP28702 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC26.87■■□□□ 1.89
RXRBP28702 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
RXRBP28702 TSPY21P-201ENST00000433481 731 ntBASIC26.87■■□□□ 1.89
RXRBP28702 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC26.87■■□□□ 1.89
RXRBP28702 TSPY23P-201ENST00000440136 739 ntBASIC26.87■■□□□ 1.89
RXRBP28702 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC26.87■■□□□ 1.89
RXRBP28702 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC26.87■■□□□ 1.89
RXRBP28702 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC26.87■■□□□ 1.89
RXRBP28702 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
RXRBP28702 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC26.87■■□□□ 1.89
RXRBP28702 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
RXRBP28702 DGCR10-201ENST00000609839 495 ntBASIC26.87■■□□□ 1.89
RXRBP28702 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
RXRBP28702 KRT8P10-201ENST00000450021 1447 ntBASIC26.87■■□□□ 1.89
RXRBP28702 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC26.87■■□□□ 1.89
RXRBP28702 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
RXRBP28702 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
RXRBP28702 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
RXRBP28702 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
RXRBP28702 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
RXRBP28702 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
RXRBP28702 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
RXRBP28702 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC26.86■■□□□ 1.89
RXRBP28702 CD70-202ENST00000423145 881 ntTSL 2 BASIC26.86■■□□□ 1.89
RXRBP28702 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC26.86■■□□□ 1.89
RXRBP28702 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC26.86■■□□□ 1.89
RXRBP28702 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
RXRBP28702 AC097488.1-201ENST00000507834 756 ntBASIC26.86■■□□□ 1.89
RXRBP28702 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC26.86■■□□□ 1.89
RXRBP28702 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC26.86■■□□□ 1.89
RXRBP28702 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC26.86■■□□□ 1.89
RXRBP28702 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC26.85■■□□□ 1.89
RXRBP28702 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
RXRBP28702 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26.85■■□□□ 1.89
RXRBP28702 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC26.85■■□□□ 1.89
RXRBP28702 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC26.85■■□□□ 1.89
RXRBP28702 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC26.85■■□□□ 1.89
RXRBP28702 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC26.85■■□□□ 1.89
RXRBP28702 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
RXRBP28702 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms