Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL9A1P20849 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL9A1P20849 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL9A1P20849 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL9A1P20849 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.99■□□□□ 0.95
COL9A1P20849 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
COL9A1P20849 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
COL9A1P20849 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL9A1P20849 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.99■□□□□ 0.95
COL9A1P20849 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.99■□□□□ 0.95
COL9A1P20849 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.99■□□□□ 0.95
COL9A1P20849 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.99■□□□□ 0.95
COL9A1P20849 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.99■□□□□ 0.95
COL9A1P20849 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL9A1P20849 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.99■□□□□ 0.95
COL9A1P20849 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.99■□□□□ 0.95
COL9A1P20849 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL9A1P20849 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL9A1P20849 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
COL9A1P20849 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
COL9A1P20849 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL9A1P20849 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL9A1P20849 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.98■□□□□ 0.95
COL9A1P20849 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL9A1P20849 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL9A1P20849 AL390955.1-201ENST00000428694 934 ntBASIC20.98■□□□□ 0.95
COL9A1P20849 AC128688.1-201ENST00000487626 519 ntBASIC20.98■□□□□ 0.95
COL9A1P20849 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL9A1P20849 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.98■□□□□ 0.95
COL9A1P20849 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL9A1P20849 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
COL9A1P20849 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.98■□□□□ 0.95
COL9A1P20849 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL9A1P20849 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL9A1P20849 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
COL9A1P20849 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.97■□□□□ 0.95
COL9A1P20849 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL9A1P20849 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.97■□□□□ 0.95
COL9A1P20849 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.97■□□□□ 0.95
COL9A1P20849 AC139530.3-201ENST00000620344 690 ntBASIC20.97■□□□□ 0.95
COL9A1P20849 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL9A1P20849 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL9A1P20849 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.97■□□□□ 0.95
COL9A1P20849 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.97■□□□□ 0.95
COL9A1P20849 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL9A1P20849 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
COL9A1P20849 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL9A1P20849 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
COL9A1P20849 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL9A1P20849 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL9A1P20849 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.96■□□□□ 0.95
COL9A1P20849 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.96■□□□□ 0.95
COL9A1P20849 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL9A1P20849 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL9A1P20849 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL9A1P20849 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL9A1P20849 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL9A1P20849 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COL9A1P20849 PCED1CP-201ENST00000419887 785 ntBASIC20.96■□□□□ 0.95
COL9A1P20849 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.96■□□□□ 0.95
COL9A1P20849 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL9A1P20849 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.96■□□□□ 0.95
COL9A1P20849 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL9A1P20849 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.96■□□□□ 0.95
COL9A1P20849 LINC02084-201ENST00000606069 1096 ntBASIC20.96■□□□□ 0.95
COL9A1P20849 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL9A1P20849 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL9A1P20849 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL9A1P20849 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL9A1P20849 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL9A1P20849 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL9A1P20849 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL9A1P20849 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL9A1P20849 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL9A1P20849 MCRIP2P1-201ENST00000394346 511 ntBASIC20.95■□□□□ 0.94
COL9A1P20849 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.95■□□□□ 0.94
COL9A1P20849 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL9A1P20849 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
COL9A1P20849 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.95■□□□□ 0.94
COL9A1P20849 REXO1L10P-201ENST00000615707 1290 ntBASIC20.95■□□□□ 0.94
COL9A1P20849 AC012313.10-201ENST00000623509 926 ntBASIC20.95■□□□□ 0.94
COL9A1P20849 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL9A1P20849 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.95■□□□□ 0.94
COL9A1P20849 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL9A1P20849 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL9A1P20849 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.94■□□□□ 0.94
COL9A1P20849 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
COL9A1P20849 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.94■□□□□ 0.94
COL9A1P20849 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL9A1P20849 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
COL9A1P20849 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.94■□□□□ 0.94
COL9A1P20849 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.94■□□□□ 0.94
COL9A1P20849 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.94■□□□□ 0.94
COL9A1P20849 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.94■□□□□ 0.94
COL9A1P20849 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.94■□□□□ 0.94
COL9A1P20849 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.94■□□□□ 0.94
COL9A1P20849 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
COL9A1P20849 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL9A1P20849 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL9A1P20849 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms