Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL1P09341 KRT8P33-201ENST00000508125 1423 ntBASIC15.7■□□□□ 0.1
CXCL1P09341 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
CXCL1P09341 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC15.7■□□□□ 0.1
CXCL1P09341 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC15.7■□□□□ 0.1
CXCL1P09341 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL1P09341 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC15.7■□□□□ 0.1
CXCL1P09341 EXOG-217ENST00000630638 197 ntTSL 5 BASIC15.7■□□□□ 0.1
CXCL1P09341 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL1P09341 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CXCL1P09341 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL1P09341 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL1P09341 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL1P09341 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL1P09341 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC15.7■□□□□ 0.1
CXCL1P09341 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC15.7■□□□□ 0.1
CXCL1P09341 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL1P09341 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
CXCL1P09341 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL1P09341 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CXCL1P09341 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC15.69■□□□□ 0.1
CXCL1P09341 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CXCL1P09341 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CXCL1P09341 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL1P09341 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC15.69■□□□□ 0.1
CXCL1P09341 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL1P09341 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
CXCL1P09341 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CXCL1P09341 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL1P09341 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
CXCL1P09341 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL1P09341 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC15.69■□□□□ 0.1
CXCL1P09341 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC15.69■□□□□ 0.1
CXCL1P09341 AL034346.1-201ENST00000568244 1277 ntBASIC15.69■□□□□ 0.1
CXCL1P09341 Z92544.1-202ENST00000571933 1220 ntBASIC15.69■□□□□ 0.1
CXCL1P09341 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC15.69■□□□□ 0.1
CXCL1P09341 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL1P09341 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC15.69■□□□□ 0.1
CXCL1P09341 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL1P09341 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC15.68■□□□□ 0.1
CXCL1P09341 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
CXCL1P09341 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC15.68■□□□□ 0.1
CXCL1P09341 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CXCL1P09341 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC15.68■□□□□ 0.1
CXCL1P09341 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CXCL1P09341 KRT125P-201ENST00000546827 989 ntBASIC15.68■□□□□ 0.1
CXCL1P09341 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
CXCL1P09341 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.68■□□□□ 0.1
CXCL1P09341 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC15.68■□□□□ 0.1
CXCL1P09341 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
CXCL1P09341 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
CXCL1P09341 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.68■□□□□ 0.1
CXCL1P09341 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.68■□□□□ 0.1
CXCL1P09341 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC15.68■□□□□ 0.1
CXCL1P09341 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL1P09341 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC15.67■□□□□ 0.1
CXCL1P09341 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CXCL1P09341 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC15.67■□□□□ 0.1
CXCL1P09341 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC15.67■□□□□ 0.1
CXCL1P09341 AC087239.1-201ENST00000622671 572 ntBASIC15.67■□□□□ 0.1
CXCL1P09341 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CXCL1P09341 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC15.67■□□□□ 0.1
CXCL1P09341 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC15.67■□□□□ 0.1
CXCL1P09341 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC15.67■□□□□ 0.1
CXCL1P09341 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 AC020763.4-201ENST00000623414 4170 ntBASIC15.67■□□□□ 0.1
CXCL1P09341 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
CXCL1P09341 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC15.67■□□□□ 0.1
CXCL1P09341 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CXCL1P09341 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
CXCL1P09341 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms