Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SIX3O95343 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SIX3O95343 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.8■□□□□ 0.76
SIX3O95343 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SIX3O95343 DPP3P2-201ENST00000416030 1696 ntBASIC19.8■□□□□ 0.76
SIX3O95343 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SIX3O95343 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SIX3O95343 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.8■□□□□ 0.76
SIX3O95343 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SIX3O95343 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
SIX3O95343 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.79■□□□□ 0.76
SIX3O95343 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.79■□□□□ 0.76
SIX3O95343 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.79■□□□□ 0.76
SIX3O95343 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.79■□□□□ 0.76
SIX3O95343 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.79■□□□□ 0.76
SIX3O95343 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.79■□□□□ 0.76
SIX3O95343 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.79■□□□□ 0.76
SIX3O95343 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.79■□□□□ 0.76
SIX3O95343 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
SIX3O95343 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.79■□□□□ 0.76
SIX3O95343 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.79■□□□□ 0.76
SIX3O95343 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.79■□□□□ 0.76
SIX3O95343 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SIX3O95343 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.79■□□□□ 0.76
SIX3O95343 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.79■□□□□ 0.76
SIX3O95343 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SIX3O95343 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.79■□□□□ 0.76
SIX3O95343 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.78■□□□□ 0.76
SIX3O95343 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.78■□□□□ 0.76
SIX3O95343 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SIX3O95343 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
SIX3O95343 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SIX3O95343 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX3O95343 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
SIX3O95343 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
SIX3O95343 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX3O95343 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.78■□□□□ 0.76
SIX3O95343 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.78■□□□□ 0.76
SIX3O95343 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.78■□□□□ 0.76
SIX3O95343 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SIX3O95343 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.78■□□□□ 0.76
SIX3O95343 FAM21FP-204ENST00000608637 956 ntBASIC19.78■□□□□ 0.76
SIX3O95343 AC010536.3-201ENST00000620306 533 ntBASIC19.78■□□□□ 0.76
SIX3O95343 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX3O95343 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SIX3O95343 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
SIX3O95343 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX3O95343 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SIX3O95343 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.77■□□□□ 0.76
SIX3O95343 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.77■□□□□ 0.76
SIX3O95343 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.77■□□□□ 0.76
SIX3O95343 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX3O95343 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX3O95343 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.77■□□□□ 0.76
SIX3O95343 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX3O95343 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX3O95343 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.77■□□□□ 0.76
SIX3O95343 TERF1P5-201ENST00000477545 1207 ntBASIC19.77■□□□□ 0.76
SIX3O95343 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.77■□□□□ 0.76
SIX3O95343 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.77■□□□□ 0.76
SIX3O95343 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SIX3O95343 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.77■□□□□ 0.76
SIX3O95343 MIR6821-201ENST00000617625 74 ntBASIC19.77■□□□□ 0.76
SIX3O95343 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SIX3O95343 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SIX3O95343 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
SIX3O95343 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.77■□□□□ 0.76
SIX3O95343 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SIX3O95343 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.77■□□□□ 0.76
SIX3O95343 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
SIX3O95343 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SIX3O95343 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.77■□□□□ 0.75
SIX3O95343 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.76■□□□□ 0.75
SIX3O95343 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX3O95343 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX3O95343 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.76■□□□□ 0.75
SIX3O95343 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX3O95343 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.76■□□□□ 0.75
SIX3O95343 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX3O95343 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX3O95343 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.76■□□□□ 0.75
SIX3O95343 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.76■□□□□ 0.75
SIX3O95343 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SIX3O95343 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.76■□□□□ 0.75
SIX3O95343 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms