Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 DUX4L2-201ENST00000561772 1275 ntBASIC19.93■□□□□ 0.78
TRIM13O60858 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.93■□□□□ 0.78
TRIM13O60858 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.93■□□□□ 0.78
TRIM13O60858 DUX4L6-201ENST00000626483 1275 ntBASIC19.93■□□□□ 0.78
TRIM13O60858 DUX4L1-201ENST00000627662 1275 ntBASIC19.93■□□□□ 0.78
TRIM13O60858 DUX4L8-201ENST00000629013 1275 ntBASIC19.93■□□□□ 0.78
TRIM13O60858 DUX4L3-201ENST00000630187 1275 ntBASIC19.93■□□□□ 0.78
TRIM13O60858 DUX4L7-201ENST00000630678 1275 ntBASIC19.93■□□□□ 0.78
TRIM13O60858 DUX4L5-201ENST00000630834 1275 ntBASIC19.93■□□□□ 0.78
TRIM13O60858 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.93■□□□□ 0.78
TRIM13O60858 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM13O60858 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM13O60858 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM13O60858 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.93■□□□□ 0.78
TRIM13O60858 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM13O60858 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
TRIM13O60858 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM13O60858 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM13O60858 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM13O60858 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM13O60858 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM13O60858 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
TRIM13O60858 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM13O60858 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM13O60858 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM13O60858 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.92■□□□□ 0.78
TRIM13O60858 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM13O60858 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM13O60858 AC116562.4-201ENST00000641316 2276 ntBASIC19.92■□□□□ 0.78
TRIM13O60858 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM13O60858 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM13O60858 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
TRIM13O60858 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM13O60858 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM13O60858 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM13O60858 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM13O60858 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM13O60858 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM13O60858 AL158211.5-201ENST00000623583 2518 ntBASIC19.91■□□□□ 0.78
TRIM13O60858 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TRIM13O60858 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
TRIM13O60858 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM13O60858 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM13O60858 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.91■□□□□ 0.78
TRIM13O60858 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM13O60858 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
TRIM13O60858 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
TRIM13O60858 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM13O60858 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM13O60858 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM13O60858 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.91■□□□□ 0.78
TRIM13O60858 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM13O60858 KRT8P36-201ENST00000489121 1440 ntBASIC19.91■□□□□ 0.78
TRIM13O60858 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM13O60858 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TRIM13O60858 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.91■□□□□ 0.78
TRIM13O60858 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM13O60858 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM13O60858 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM13O60858 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM13O60858 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TRIM13O60858 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM13O60858 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM13O60858 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM13O60858 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM13O60858 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TRIM13O60858 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
TRIM13O60858 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TRIM13O60858 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM13O60858 DPP3P2-201ENST00000416030 1696 ntBASIC19.9■□□□□ 0.78
TRIM13O60858 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TRIM13O60858 AC087289.5-201ENST00000586076 3175 ntBASIC19.89■□□□□ 0.78
TRIM13O60858 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
TRIM13O60858 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM13O60858 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
TRIM13O60858 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM13O60858 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM13O60858 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM13O60858 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM13O60858 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.89■□□□□ 0.77
TRIM13O60858 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.89■□□□□ 0.77
TRIM13O60858 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM13O60858 AP001160.3-201ENST00000601484 763 ntBASIC19.89■□□□□ 0.77
TRIM13O60858 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM13O60858 AC104187.1-201ENST00000607510 612 ntBASIC19.89■□□□□ 0.77
TRIM13O60858 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM13O60858 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM13O60858 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM13O60858 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM13O60858 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM13O60858 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.88■□□□□ 0.77
TRIM13O60858 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.88■□□□□ 0.77
TRIM13O60858 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM13O60858 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM13O60858 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM13O60858 AC091799.1-201ENST00000422823 811 ntBASIC19.88■□□□□ 0.77
TRIM13O60858 CCDC92B-201ENST00000575506 885 ntBASIC19.88■□□□□ 0.77
TRIM13O60858 RNF165-205ENST00000588679 2904 ntBASIC19.88■□□□□ 0.77
TRIM13O60858 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
TRIM13O60858 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms