Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CBX4O00257 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CBX4O00257 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.72■□□□□ 0.91
CBX4O00257 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CBX4O00257 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CBX4O00257 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CBX4O00257 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CBX4O00257 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.72■□□□□ 0.91
CBX4O00257 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CBX4O00257 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.72■□□□□ 0.91
CBX4O00257 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CBX4O00257 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.72■□□□□ 0.91
CBX4O00257 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.72■□□□□ 0.91
CBX4O00257 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CBX4O00257 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CBX4O00257 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
CBX4O00257 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CBX4O00257 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CBX4O00257 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CBX4O00257 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CBX4O00257 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CBX4O00257 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CBX4O00257 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.71■□□□□ 0.91
CBX4O00257 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CBX4O00257 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.71■□□□□ 0.91
CBX4O00257 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CBX4O00257 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CBX4O00257 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CBX4O00257 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CBX4O00257 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.71■□□□□ 0.91
CBX4O00257 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CBX4O00257 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CBX4O00257 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.7■□□□□ 0.9
CBX4O00257 PRORSD1P-201ENST00000295112 541 ntBASIC20.7■□□□□ 0.9
CBX4O00257 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.7■□□□□ 0.9
CBX4O00257 KRT18P29-201ENST00000397031 1267 ntBASIC20.7■□□□□ 0.9
CBX4O00257 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.7■□□□□ 0.9
CBX4O00257 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.7■□□□□ 0.9
CBX4O00257 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.7■□□□□ 0.9
CBX4O00257 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.7■□□□□ 0.9
CBX4O00257 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.7■□□□□ 0.9
CBX4O00257 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.7■□□□□ 0.9
CBX4O00257 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
CBX4O00257 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.7■□□□□ 0.9
CBX4O00257 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
CBX4O00257 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CBX4O00257 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CBX4O00257 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CBX4O00257 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
CBX4O00257 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.69■□□□□ 0.9
CBX4O00257 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CBX4O00257 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.69■□□□□ 0.9
CBX4O00257 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CBX4O00257 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.69■□□□□ 0.9
CBX4O00257 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CBX4O00257 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CBX4O00257 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CBX4O00257 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.69■□□□□ 0.9
CBX4O00257 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.69■□□□□ 0.9
CBX4O00257 ITM2C-210ENST00000620962 501 ntBASIC20.69■□□□□ 0.9
CBX4O00257 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CBX4O00257 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CBX4O00257 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CBX4O00257 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.69■□□□□ 0.9
CBX4O00257 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.69■□□□□ 0.9
CBX4O00257 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CBX4O00257 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CBX4O00257 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
CBX4O00257 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CBX4O00257 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.68■□□□□ 0.9
CBX4O00257 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CBX4O00257 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CBX4O00257 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CBX4O00257 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CBX4O00257 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
CBX4O00257 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.68■□□□□ 0.9
CBX4O00257 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.68■□□□□ 0.9
CBX4O00257 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CBX4O00257 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CBX4O00257 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CBX4O00257 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.68■□□□□ 0.9
CBX4O00257 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
CBX4O00257 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.68■□□□□ 0.9
CBX4O00257 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CBX4O00257 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CBX4O00257 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.67■□□□□ 0.9
CBX4O00257 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.67■□□□□ 0.9
CBX4O00257 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.67■□□□□ 0.9
CBX4O00257 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CBX4O00257 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CBX4O00257 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
CBX4O00257 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.67■□□□□ 0.9
CBX4O00257 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CBX4O00257 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.67■□□□□ 0.9
CBX4O00257 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.67■□□□□ 0.9
CBX4O00257 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.67■□□□□ 0.9
CBX4O00257 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.67■□□□□ 0.9
CBX4O00257 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.67■□□□□ 0.9
CBX4O00257 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CBX4O00257 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms