Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM1O00151 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM1O00151 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM1O00151 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM1O00151 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.24■□□□□ 0.67
PDLIM1O00151 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM1O00151 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.24■□□□□ 0.67
PDLIM1O00151 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM1O00151 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.24■□□□□ 0.67
PDLIM1O00151 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
PDLIM1O00151 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM1O00151 TCF3P1-201ENST00000423021 1937 ntBASIC19.23■□□□□ 0.67
PDLIM1O00151 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM1O00151 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM1O00151 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PDLIM1O00151 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.23■□□□□ 0.67
PDLIM1O00151 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM1O00151 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM1O00151 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.23■□□□□ 0.67
PDLIM1O00151 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM1O00151 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.23■□□□□ 0.67
PDLIM1O00151 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM1O00151 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
PDLIM1O00151 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PDLIM1O00151 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.23■□□□□ 0.67
PDLIM1O00151 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.23■□□□□ 0.67
PDLIM1O00151 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM1O00151 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM1O00151 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.22■□□□□ 0.67
PDLIM1O00151 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.22■□□□□ 0.67
PDLIM1O00151 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
PDLIM1O00151 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM1O00151 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM1O00151 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
PDLIM1O00151 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM1O00151 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM1O00151 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM1O00151 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.22■□□□□ 0.67
PDLIM1O00151 MIR572-201ENST00000384983 95 ntBASIC19.22■□□□□ 0.67
PDLIM1O00151 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM1O00151 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.22■□□□□ 0.67
PDLIM1O00151 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM1O00151 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM1O00151 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.22■□□□□ 0.67
PDLIM1O00151 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM1O00151 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PDLIM1O00151 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM1O00151 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.22■□□□□ 0.67
PDLIM1O00151 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
PDLIM1O00151 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.21■□□□□ 0.67
PDLIM1O00151 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.21■□□□□ 0.67
PDLIM1O00151 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
PDLIM1O00151 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
PDLIM1O00151 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.21■□□□□ 0.67
PDLIM1O00151 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
PDLIM1O00151 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.21■□□□□ 0.67
PDLIM1O00151 AC125437.2-201ENST00000625180 2167 ntBASIC19.21■□□□□ 0.67
PDLIM1O00151 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
PDLIM1O00151 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.21■□□□□ 0.67
PDLIM1O00151 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM1O00151 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM1O00151 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
PDLIM1O00151 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM1O00151 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.2■□□□□ 0.66
PDLIM1O00151 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM1O00151 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM1O00151 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.2■□□□□ 0.66
PDLIM1O00151 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.2■□□□□ 0.66
PDLIM1O00151 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM1O00151 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.2■□□□□ 0.66
PDLIM1O00151 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM1O00151 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
PDLIM1O00151 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.2■□□□□ 0.66
PDLIM1O00151 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM1O00151 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM1O00151 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM1O00151 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM1O00151 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
PDLIM1O00151 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM1O00151 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM1O00151 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM1O00151 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.19■□□□□ 0.66
PDLIM1O00151 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM1O00151 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM1O00151 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms