Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 FEM1AP1-201ENST00000431297 1995 ntBASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 NORAD-201ENST00000565493 5339 ntBASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CHKB-CPT1BH3BT56 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 ME2-218ENST00000640965 2476 ntTSL 5 BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CHKB-CPT1BH3BT56 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CHKB-CPT1BH3BT56 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
CHKB-CPT1BH3BT56 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CHKB-CPT1BH3BT56 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC11.28□□□□□ -0.6
CHKB-CPT1BH3BT56 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
CHKB-CPT1BH3BT56 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC11.28□□□□□ -0.6
CHKB-CPT1BH3BT56 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
CHKB-CPT1BH3BT56 Z98882.1-201ENST00000622160 2253 ntBASIC11.28□□□□□ -0.6
CHKB-CPT1BH3BT56 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CHKB-CPT1BH3BT56 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC11.28□□□□□ -0.6
CHKB-CPT1BH3BT56 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms