Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SMKR1H3BMG3 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
SMKR1H3BMG3 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SMKR1H3BMG3 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
SMKR1H3BMG3 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC14.8□□□□□ -0.04
SMKR1H3BMG3 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SMKR1H3BMG3 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SMKR1H3BMG3 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SMKR1H3BMG3 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
SMKR1H3BMG3 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SMKR1H3BMG3 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SMKR1H3BMG3 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 STAC-204ENST00000457375 1366 ntTSL 2 BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
SMKR1H3BMG3 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 AC005332.7-201ENST00000614046 2005 ntBASIC14.78□□□□□ -0.04
SMKR1H3BMG3 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 ASL-203ENST00000380839 1765 ntTSL 5 BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 AC026471.1-201ENST00000564629 3026 ntBASIC14.78□□□□□ -0.04
SMKR1H3BMG3 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 UNC93B8-201ENST00000511903 705 ntBASIC14.78□□□□□ -0.04
SMKR1H3BMG3 AP005435.1-201ENST00000529293 1178 ntBASIC14.78□□□□□ -0.04
SMKR1H3BMG3 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SMKR1H3BMG3 NEFHP1-201ENST00000412845 2629 ntBASIC14.78□□□□□ -0.04
SMKR1H3BMG3 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SMKR1H3BMG3 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC14.77□□□□□ -0.04
SMKR1H3BMG3 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SMKR1H3BMG3 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SMKR1H3BMG3 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SMKR1H3BMG3 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC14.77□□□□□ -0.04
SMKR1H3BMG3 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SMKR1H3BMG3 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SMKR1H3BMG3 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC14.77□□□□□ -0.04
SMKR1H3BMG3 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
SMKR1H3BMG3 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SMKR1H3BMG3 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 SLC47A1P1-202ENST00000449666 945 ntBASIC14.77□□□□□ -0.05
SMKR1H3BMG3 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 SMUG1P1-201ENST00000590640 811 ntBASIC14.77□□□□□ -0.05
SMKR1H3BMG3 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SMKR1H3BMG3 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms