Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 Z82202.1-201ENST00000623446 1880 ntBASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAV1-2A0A0B4J238 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV1-2A0A0B4J238 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 DPP3P2-201ENST00000416030 1696 ntBASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 KRT16P2-201ENST00000414673 1423 ntBASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 AL035685.1-201ENST00000636663 812 ntBASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-2A0A0B4J238 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.58■□□□□ 0.41
TRAV1-2A0A0B4J238 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
TRAV1-2A0A0B4J238 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV1-2A0A0B4J238 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.58■□□□□ 0.41
TRAV1-2A0A0B4J238 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.58■□□□□ 0.41
TRAV1-2A0A0B4J238 KRT8P36-201ENST00000489121 1440 ntBASIC17.58■□□□□ 0.41
TRAV1-2A0A0B4J238 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV1-2A0A0B4J238 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV1-2A0A0B4J238 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV1-2A0A0B4J238 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAV1-2A0A0B4J238 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-2A0A0B4J238 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-2A0A0B4J238 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
TRAV1-2A0A0B4J238 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-2A0A0B4J238 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-2A0A0B4J238 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-2A0A0B4J238 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
TRAV1-2A0A0B4J238 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
TRAV1-2A0A0B4J238 MPST-208ENST00000628507 698 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAV1-2A0A0B4J238 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-2A0A0B4J238 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
TRAV1-2A0A0B4J238 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms