Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SSX2IPQ9Y2D8 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.83■■□□□ 1.09
SSX2IPQ9Y2D8 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.83■■□□□ 1.09
SSX2IPQ9Y2D8 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.83■■□□□ 1.09
SSX2IPQ9Y2D8 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.83■■□□□ 1.09
SSX2IPQ9Y2D8 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.83■■□□□ 1.09
SSX2IPQ9Y2D8 AC069544.1-201ENST00000609399 999 ntBASIC21.83■■□□□ 1.09
SSX2IPQ9Y2D8 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SSX2IPQ9Y2D8 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SSX2IPQ9Y2D8 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SSX2IPQ9Y2D8 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.82■■□□□ 1.08
SSX2IPQ9Y2D8 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SSX2IPQ9Y2D8 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX2IPQ9Y2D8 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SSX2IPQ9Y2D8 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.78■■□□□ 1.08
SSX2IPQ9Y2D8 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SSX2IPQ9Y2D8 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SSX2IPQ9Y2D8 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
SSX2IPQ9Y2D8 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms