Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 BID-212ENST00000614949 1988 ntTSL 5 BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 REXO2-216ENST00000544196 452 ntTSL 3 BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC24.13■■□□□ 1.45
DDX4Q9NQI0 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
DDX4Q9NQI0 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
DDX4Q9NQI0 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
DDX4Q9NQI0 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
DDX4Q9NQI0 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC24.12■■□□□ 1.45
DDX4Q9NQI0 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
DDX4Q9NQI0 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC24.12■■□□□ 1.45
DDX4Q9NQI0 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC24.12■■□□□ 1.45
DDX4Q9NQI0 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
DDX4Q9NQI0 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC24.12■■□□□ 1.45
DDX4Q9NQI0 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC24.12■■□□□ 1.45
DDX4Q9NQI0 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC24.12■■□□□ 1.45
DDX4Q9NQI0 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
DDX4Q9NQI0 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 MDFI-202ENST00000373050 809 ntTSL 2 BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 AL390719.1-204ENST00000412397 1219 ntBASIC24.11■■□□□ 1.45
DDX4Q9NQI0 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 AC239809.2-201ENST00000415381 517 ntBASIC24.11■■□□□ 1.45
DDX4Q9NQI0 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
DDX4Q9NQI0 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 AC121338.2-201ENST00000622535 1744 ntBASIC24.1■■□□□ 1.45
DDX4Q9NQI0 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
DDX4Q9NQI0 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 KRASP1-201ENST00000407852 552 ntBASIC24.09■■□□□ 1.45
DDX4Q9NQI0 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 FEM1AP4-201ENST00000443167 1987 ntBASIC24.09■■□□□ 1.45
DDX4Q9NQI0 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
DDX4Q9NQI0 AC124283.5-201ENST00000624661 1809 ntBASIC24.08■■□□□ 1.45
DDX4Q9NQI0 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
DDX4Q9NQI0 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
DDX4Q9NQI0 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC24.08■■□□□ 1.45
DDX4Q9NQI0 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC24.08■■□□□ 1.45
DDX4Q9NQI0 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC24.08■■□□□ 1.45
DDX4Q9NQI0 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
DDX4Q9NQI0 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC24.08■■□□□ 1.45
DDX4Q9NQI0 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC24.08■■□□□ 1.45
DDX4Q9NQI0 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms