Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 AC005332.7-201ENST00000614046 2005 ntBASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 KRT18P24-201ENST00000344739 1156 ntBASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 GPX1-201ENST00000419349 1106 ntBASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 AP000997.3-201ENST00000623333 2250 ntBASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.95■□□□□ 0.62
VCX3AQ9NNX9 OR6D1P-202ENST00000641007 5290 ntBASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 MTX2-204ENST00000443241 799 ntTSL 3 BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
VCX3AQ9NNX9 PCDHB18P-201ENST00000524813 2368 ntBASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
VCX3AQ9NNX9 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 ABHD17AP4-201ENST00000411545 909 ntBASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.92■□□□□ 0.62
VCX3AQ9NNX9 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms