Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
MMP28Q9H239 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MMP28Q9H239 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
MMP28Q9H239 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
MMP28Q9H239 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.85■□□□□ 0.45
MMP28Q9H239 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MMP28Q9H239 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MMP28Q9H239 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MMP28Q9H239 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MMP28Q9H239 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
MMP28Q9H239 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.85■□□□□ 0.45
MMP28Q9H239 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MMP28Q9H239 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MMP28Q9H239 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.85■□□□□ 0.45
MMP28Q9H239 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MMP28Q9H239 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.85■□□□□ 0.45
MMP28Q9H239 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MMP28Q9H239 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.85■□□□□ 0.45
MMP28Q9H239 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.85■□□□□ 0.45
MMP28Q9H239 AC005332.8-201ENST00000622750 2735 ntBASIC17.85■□□□□ 0.45
MMP28Q9H239 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
MMP28Q9H239 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MMP28Q9H239 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.84■□□□□ 0.45
MMP28Q9H239 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 BID-203ENST00000399765 1879 ntTSL 2 BASIC17.84■□□□□ 0.45
MMP28Q9H239 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
MMP28Q9H239 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
MMP28Q9H239 ZNRF2P3-201ENST00000424200 374 ntBASIC17.84■□□□□ 0.45
MMP28Q9H239 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC17.84■□□□□ 0.45
MMP28Q9H239 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.84■□□□□ 0.45
MMP28Q9H239 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.84■□□□□ 0.45
MMP28Q9H239 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.84■□□□□ 0.45
MMP28Q9H239 AC068587.7-201ENST00000641602 218 ntBASIC17.84■□□□□ 0.45
MMP28Q9H239 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
MMP28Q9H239 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
MMP28Q9H239 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MMP28Q9H239 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
MMP28Q9H239 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.45
MMP28Q9H239 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
MMP28Q9H239 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
MMP28Q9H239 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MMP28Q9H239 TCF3P1-201ENST00000423021 1937 ntBASIC17.83■□□□□ 0.44
MMP28Q9H239 AC079089.2-201ENST00000531211 1277 ntBASIC17.83■□□□□ 0.44
MMP28Q9H239 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC17.83■□□□□ 0.44
MMP28Q9H239 AL031602.1-201ENST00000633169 911 ntBASIC17.83■□□□□ 0.44
MMP28Q9H239 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
MMP28Q9H239 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
MMP28Q9H239 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
MMP28Q9H239 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
MMP28Q9H239 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
MMP28Q9H239 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
MMP28Q9H239 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.83■□□□□ 0.44
MMP28Q9H239 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
MMP28Q9H239 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.83■□□□□ 0.44
MMP28Q9H239 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
MMP28Q9H239 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
MMP28Q9H239 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.83■□□□□ 0.44
MMP28Q9H239 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.83■□□□□ 0.44
MMP28Q9H239 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.83■□□□□ 0.44
MMP28Q9H239 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MMP28Q9H239 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MMP28Q9H239 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
MMP28Q9H239 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
MMP28Q9H239 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MMP28Q9H239 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MMP28Q9H239 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
MMP28Q9H239 RBM38-205ENST00000440234 686 ntTSL 2 BASIC17.82■□□□□ 0.44
MMP28Q9H239 SLC47A1P1-202ENST00000449666 945 ntBASIC17.82■□□□□ 0.44
MMP28Q9H239 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC17.82■□□□□ 0.44
MMP28Q9H239 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.82■□□□□ 0.44
MMP28Q9H239 AC010525.1-201ENST00000585559 441 ntBASIC17.82■□□□□ 0.44
MMP28Q9H239 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
MMP28Q9H239 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
MMP28Q9H239 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.82■□□□□ 0.44
MMP28Q9H239 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MMP28Q9H239 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MMP28Q9H239 OR7E47P-201ENST00000546390 1422 ntBASIC17.81■□□□□ 0.44
MMP28Q9H239 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
MMP28Q9H239 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
MMP28Q9H239 AC121338.2-201ENST00000622535 1744 ntBASIC17.81■□□□□ 0.44
MMP28Q9H239 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
MMP28Q9H239 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
MMP28Q9H239 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.81■□□□□ 0.44
MMP28Q9H239 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.81■□□□□ 0.44
MMP28Q9H239 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.81■□□□□ 0.44
MMP28Q9H239 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
MMP28Q9H239 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms