Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 MIR572-201ENST00000384983 95 ntBASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 AL136116.3-201ENST00000402907 1138 ntBASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 AC008764.7-201ENST00000593779 1081 ntBASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CCDC28BQ9BUN5 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28BQ9BUN5 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 AC099791.1-201ENST00000416440 715 ntBASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 AC245052.3-201ENST00000450182 901 ntBASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 AL158211.5-201ENST00000623583 2518 ntBASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 AC135279.3-201ENST00000610945 1311 ntBASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC28BQ9BUN5 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 TMEM179-206ENST00000616017 1645 ntBASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28BQ9BUN5 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms