Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 MIR2861-201ENST00000636310 90 ntBASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PTCHD1Q96NR3 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
PTCHD1Q96NR3 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
PTCHD1Q96NR3 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PTCHD1Q96NR3 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD1Q96NR3 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
PTCHD1Q96NR3 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD1Q96NR3 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 MYC-209ENST00000641252 345 ntBASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 FP700111.2-201ENST00000619190 1892 ntBASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD1Q96NR3 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms