Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHFRQ96EP1 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.77■□□□□ 0.92
CHFRQ96EP1 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CHFRQ96EP1 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHFRQ96EP1 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHFRQ96EP1 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHFRQ96EP1 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CHFRQ96EP1 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.77■□□□□ 0.92
CHFRQ96EP1 AL390719.1-204ENST00000412397 1219 ntBASIC20.77■□□□□ 0.92
CHFRQ96EP1 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.77■□□□□ 0.92
CHFRQ96EP1 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.77■□□□□ 0.92
CHFRQ96EP1 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
CHFRQ96EP1 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHFRQ96EP1 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.77■□□□□ 0.92
CHFRQ96EP1 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.77■□□□□ 0.92
CHFRQ96EP1 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.77■□□□□ 0.92
CHFRQ96EP1 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CHFRQ96EP1 AC113410.3-201ENST00000623366 203 ntBASIC20.77■□□□□ 0.92
CHFRQ96EP1 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHFRQ96EP1 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHFRQ96EP1 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHFRQ96EP1 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CHFRQ96EP1 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.77■□□□□ 0.92
CHFRQ96EP1 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.77■□□□□ 0.91
CHFRQ96EP1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.77■□□□□ 0.91
CHFRQ96EP1 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CHFRQ96EP1 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CHFRQ96EP1 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.77■□□□□ 0.91
CHFRQ96EP1 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CHFRQ96EP1 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.76■□□□□ 0.91
CHFRQ96EP1 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHFRQ96EP1 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CHFRQ96EP1 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHFRQ96EP1 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.76■□□□□ 0.91
CHFRQ96EP1 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.76■□□□□ 0.91
CHFRQ96EP1 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHFRQ96EP1 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.76■□□□□ 0.91
CHFRQ96EP1 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.76■□□□□ 0.91
CHFRQ96EP1 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHFRQ96EP1 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CHFRQ96EP1 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHFRQ96EP1 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHFRQ96EP1 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHFRQ96EP1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHFRQ96EP1 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
CHFRQ96EP1 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHFRQ96EP1 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHFRQ96EP1 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHFRQ96EP1 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.75■□□□□ 0.91
CHFRQ96EP1 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CHFRQ96EP1 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.75■□□□□ 0.91
CHFRQ96EP1 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHFRQ96EP1 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHFRQ96EP1 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.75■□□□□ 0.91
CHFRQ96EP1 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.75■□□□□ 0.91
CHFRQ96EP1 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CHFRQ96EP1 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHFRQ96EP1 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHFRQ96EP1 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHFRQ96EP1 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHFRQ96EP1 AC011484.1-201ENST00000377652 1995 ntBASIC20.75■□□□□ 0.91
CHFRQ96EP1 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.75■□□□□ 0.91
CHFRQ96EP1 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.75■□□□□ 0.91
CHFRQ96EP1 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CHFRQ96EP1 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHFRQ96EP1 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.74■□□□□ 0.91
CHFRQ96EP1 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.74■□□□□ 0.91
CHFRQ96EP1 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CHFRQ96EP1 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CHFRQ96EP1 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHFRQ96EP1 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.74■□□□□ 0.91
CHFRQ96EP1 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.74■□□□□ 0.91
CHFRQ96EP1 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.74■□□□□ 0.91
CHFRQ96EP1 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.74■□□□□ 0.91
CHFRQ96EP1 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.74■□□□□ 0.91
CHFRQ96EP1 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.74■□□□□ 0.91
CHFRQ96EP1 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.74■□□□□ 0.91
CHFRQ96EP1 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.74■□□□□ 0.91
CHFRQ96EP1 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHFRQ96EP1 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHFRQ96EP1 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHFRQ96EP1 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHFRQ96EP1 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
CHFRQ96EP1 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHFRQ96EP1 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHFRQ96EP1 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHFRQ96EP1 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHFRQ96EP1 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.73■□□□□ 0.91
CHFRQ96EP1 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CHFRQ96EP1 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.73■□□□□ 0.91
CHFRQ96EP1 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.73■□□□□ 0.91
CHFRQ96EP1 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHFRQ96EP1 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHFRQ96EP1 CLDN5-201ENST00000403084 2357 ntBASIC20.73■□□□□ 0.91
CHFRQ96EP1 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHFRQ96EP1 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms