Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 AL138781.2-201ENST00000617896 1843 ntBASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 TSPY13P-201ENST00000338964 914 ntBASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 AL049796.1-201ENST00000565336 1766 ntBASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 AC027702.1-201ENST00000563810 1770 ntBASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 AC004987.1-201ENST00000428627 508 ntBASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28AQ8IWP9 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 AC019171.1-201ENST00000601251 1056 ntBASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 AC020907.5-201ENST00000624372 1936 ntBASIC16.92■□□□□ 0.3
CCDC28AQ8IWP9 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC28AQ8IWP9 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms