Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.58
USP48Q86UV5 MCRIP2P1-201ENST00000394346 511 ntBASIC24.89■■□□□ 1.58
USP48Q86UV5 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP48Q86UV5 CDV3P1-201ENST00000471403 739 ntBASIC24.89■■□□□ 1.58
USP48Q86UV5 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC24.89■■□□□ 1.58
USP48Q86UV5 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC24.89■■□□□ 1.58
USP48Q86UV5 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC24.89■■□□□ 1.58
USP48Q86UV5 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC24.89■■□□□ 1.58
USP48Q86UV5 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC24.89■■□□□ 1.57
USP48Q86UV5 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC24.89■■□□□ 1.57
USP48Q86UV5 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
USP48Q86UV5 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP48Q86UV5 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
USP48Q86UV5 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP48Q86UV5 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
USP48Q86UV5 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP48Q86UV5 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC24.88■■□□□ 1.57
USP48Q86UV5 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP48Q86UV5 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC24.88■■□□□ 1.57
USP48Q86UV5 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP48Q86UV5 AC026471.6-201ENST00000622954 1905 ntBASIC24.88■■□□□ 1.57
USP48Q86UV5 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC24.88■■□□□ 1.57
USP48Q86UV5 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC24.87■■□□□ 1.57
USP48Q86UV5 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
USP48Q86UV5 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
USP48Q86UV5 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
USP48Q86UV5 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
USP48Q86UV5 KRT18P68-201ENST00000392293 1000 ntBASIC24.87■■□□□ 1.57
USP48Q86UV5 RPS2P55-201ENST00000397318 883 ntBASIC24.87■■□□□ 1.57
USP48Q86UV5 AC107956.1-201ENST00000494359 873 ntBASIC24.87■■□□□ 1.57
USP48Q86UV5 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC24.87■■□□□ 1.57
USP48Q86UV5 AC233702.5-201ENST00000584107 538 ntBASIC24.87■■□□□ 1.57
USP48Q86UV5 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC24.87■■□□□ 1.57
USP48Q86UV5 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
USP48Q86UV5 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
USP48Q86UV5 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
USP48Q86UV5 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP48Q86UV5 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC24.86■■□□□ 1.57
USP48Q86UV5 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC24.86■■□□□ 1.57
USP48Q86UV5 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC24.86■■□□□ 1.57
USP48Q86UV5 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP48Q86UV5 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP48Q86UV5 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
USP48Q86UV5 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC24.86■■□□□ 1.57
USP48Q86UV5 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP48Q86UV5 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP48Q86UV5 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
USP48Q86UV5 ISG20-202ENST00000379224 540 ntTSL 3 BASIC24.86■■□□□ 1.57
USP48Q86UV5 TK2-204ENST00000525974 1178 ntTSL 2 BASIC24.86■■□□□ 1.57
USP48Q86UV5 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
USP48Q86UV5 AC133561.5-201ENST00000635547 218 ntBASIC24.86■■□□□ 1.57
USP48Q86UV5 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC24.86■■□□□ 1.57
USP48Q86UV5 KRT17P2-201ENST00000300992 1314 ntBASIC24.86■■□□□ 1.57
USP48Q86UV5 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC24.86■■□□□ 1.57
USP48Q86UV5 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
USP48Q86UV5 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC24.85■■□□□ 1.57
USP48Q86UV5 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
USP48Q86UV5 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USP48Q86UV5 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC24.85■■□□□ 1.57
USP48Q86UV5 AC012618.2-201ENST00000428058 849 ntBASIC24.85■■□□□ 1.57
USP48Q86UV5 VMO1-204ENST00000441199 741 ntTSL 2 BASIC24.85■■□□□ 1.57
USP48Q86UV5 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
USP48Q86UV5 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USP48Q86UV5 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
USP48Q86UV5 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
USP48Q86UV5 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP48Q86UV5 GCK-205ENST00000437084 1385 ntTSL 5 BASIC24.84■■□□□ 1.57
USP48Q86UV5 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC24.84■■□□□ 1.57
USP48Q86UV5 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC24.84■■□□□ 1.57
USP48Q86UV5 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP48Q86UV5 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC24.84■■□□□ 1.57
USP48Q86UV5 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP48Q86UV5 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP48Q86UV5 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP48Q86UV5 POM121L13P-201ENST00000422362 380 ntBASIC24.84■■□□□ 1.57
USP48Q86UV5 TSPY15P-201ENST00000457163 923 ntBASIC24.84■■□□□ 1.57
USP48Q86UV5 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
USP48Q86UV5 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC24.84■■□□□ 1.57
USP48Q86UV5 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
USP48Q86UV5 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP48Q86UV5 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP48Q86UV5 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP48Q86UV5 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP48Q86UV5 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP48Q86UV5 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC24.84■■□□□ 1.57
USP48Q86UV5 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC24.84■■□□□ 1.57
USP48Q86UV5 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms