Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PRPF39Q86UA1 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
PRPF39Q86UA1 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21■□□□□ 0.95
PRPF39Q86UA1 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21■□□□□ 0.95
PRPF39Q86UA1 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
PRPF39Q86UA1 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PRPF39Q86UA1 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21■□□□□ 0.95
PRPF39Q86UA1 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF39Q86UA1 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF39Q86UA1 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF39Q86UA1 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21■□□□□ 0.95
PRPF39Q86UA1 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21■□□□□ 0.95
PRPF39Q86UA1 AC069236.1-201ENST00000604339 616 ntBASIC21■□□□□ 0.95
PRPF39Q86UA1 AC243732.1-201ENST00000612648 864 ntBASIC21■□□□□ 0.95
PRPF39Q86UA1 OR10C1-204ENST00000622521 1039 ntBASIC21■□□□□ 0.95
PRPF39Q86UA1 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF39Q86UA1 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21■□□□□ 0.95
PRPF39Q86UA1 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21■□□□□ 0.95
PRPF39Q86UA1 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21■□□□□ 0.95
PRPF39Q86UA1 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF39Q86UA1 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF39Q86UA1 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 AL391422.3-201ENST00000603791 2761 ntBASIC20.99■□□□□ 0.95
PRPF39Q86UA1 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 AC069152.1-201ENST00000438030 544 ntBASIC20.99■□□□□ 0.95
PRPF39Q86UA1 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 KRT18P6-201ENST00000555540 1265 ntBASIC20.99■□□□□ 0.95
PRPF39Q86UA1 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 AC027702.1-201ENST00000563810 1770 ntBASIC20.99■□□□□ 0.95
PRPF39Q86UA1 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.99■□□□□ 0.95
PRPF39Q86UA1 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 AC091799.1-201ENST00000422823 811 ntBASIC20.98■□□□□ 0.95
PRPF39Q86UA1 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF39Q86UA1 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 ABHD17AP1-201ENST00000358206 933 ntBASIC20.97■□□□□ 0.95
PRPF39Q86UA1 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 AC073210.2-201ENST00000430369 194 ntBASIC20.97■□□□□ 0.95
PRPF39Q86UA1 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 MIR4758-201ENST00000577688 71 ntBASIC20.97■□□□□ 0.95
PRPF39Q86UA1 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 MKRN4P-201ENST00000444706 1521 ntBASIC20.97■□□□□ 0.95
PRPF39Q86UA1 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.97■□□□□ 0.95
PRPF39Q86UA1 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 AC011484.1-201ENST00000377652 1995 ntBASIC20.96■□□□□ 0.95
PRPF39Q86UA1 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF39Q86UA1 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms