Protein–RNA interactions for Protein: Q5UIP0

RIF1, Telomere-associated protein RIF1, humanhuman

Known RBP Predictions only

Length 2,472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1Q5UIP0 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RIF1Q5UIP0 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
RIF1Q5UIP0 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.94■□□□□ 0.78
RIF1Q5UIP0 AC092647.4-201ENST00000457211 535 ntBASIC19.94■□□□□ 0.78
RIF1Q5UIP0 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.94■□□□□ 0.78
RIF1Q5UIP0 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RIF1Q5UIP0 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 AC092053.2-201ENST00000640557 1818 ntBASIC19.93■□□□□ 0.78
RIF1Q5UIP0 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 TSPY14P-201ENST00000303979 915 ntBASIC19.93■□□□□ 0.78
RIF1Q5UIP0 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 AP005242.2-201ENST00000580065 1175 ntBASIC19.93■□□□□ 0.78
RIF1Q5UIP0 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.93■□□□□ 0.78
RIF1Q5UIP0 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 AC011558.1-201ENST00000623459 338 ntBASIC19.92■□□□□ 0.78
RIF1Q5UIP0 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 ANOS2P-203ENST00000472227 1816 ntBASIC19.92■□□□□ 0.78
RIF1Q5UIP0 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 KRT8P45-201ENST00000414328 1447 ntBASIC19.92■□□□□ 0.78
RIF1Q5UIP0 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.92■□□□□ 0.78
RIF1Q5UIP0 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 NIFKP9-201ENST00000419265 221 ntBASIC19.91■□□□□ 0.78
RIF1Q5UIP0 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 FAM86EP-206ENST00000510506 987 ntBASIC19.91■□□□□ 0.78
RIF1Q5UIP0 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 TSPY5P-201ENST00000426936 936 ntBASIC19.91■□□□□ 0.78
RIF1Q5UIP0 AC091390.4-202ENST00000476426 537 ntBASIC19.91■□□□□ 0.78
RIF1Q5UIP0 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 EGLN1P1-201ENST00000531623 762 ntBASIC19.91■□□□□ 0.78
RIF1Q5UIP0 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.91■□□□□ 0.78
RIF1Q5UIP0 AC139530.3-201ENST00000620344 690 ntBASIC19.91■□□□□ 0.78
RIF1Q5UIP0 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 AC093458.2-201ENST00000623150 629 ntBASIC19.9■□□□□ 0.78
RIF1Q5UIP0 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.9■□□□□ 0.78
RIF1Q5UIP0 CR769767.2-201ENST00000622735 460 ntBASIC19.9■□□□□ 0.78
RIF1Q5UIP0 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
RIF1Q5UIP0 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
RIF1Q5UIP0 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RIF1Q5UIP0 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms