Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 FAM21FP-204ENST00000608637 956 ntBASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTCHD3Q3KNS1 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTCHD3Q3KNS1 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.83■□□□□ 0.77
PTCHD3Q3KNS1 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.83■□□□□ 0.77
PTCHD3Q3KNS1 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
PTCHD3Q3KNS1 AC093787.1-201ENST00000450396 207 ntBASIC19.83■□□□□ 0.77
PTCHD3Q3KNS1 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.83■□□□□ 0.77
PTCHD3Q3KNS1 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.83■□□□□ 0.77
PTCHD3Q3KNS1 AC098934.4-201ENST00000564127 592 ntBASIC19.83■□□□□ 0.77
PTCHD3Q3KNS1 AL162412.1-201ENST00000567129 965 ntBASIC19.83■□□□□ 0.77
PTCHD3Q3KNS1 AC008694.1-202ENST00000636953 945 ntBASIC19.83■□□□□ 0.77
PTCHD3Q3KNS1 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.83■□□□□ 0.76
PTCHD3Q3KNS1 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
PTCHD3Q3KNS1 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PTCHD3Q3KNS1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.83■□□□□ 0.76
PTCHD3Q3KNS1 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
PTCHD3Q3KNS1 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.83■□□□□ 0.76
PTCHD3Q3KNS1 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 AC069236.1-201ENST00000604339 616 ntBASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 AC073130.3-201ENST00000624389 2278 ntBASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD3Q3KNS1 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 MKRN4P-201ENST00000444706 1521 ntBASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
PTCHD3Q3KNS1 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms