Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 AC026396.1-201ENST00000419388 421 ntBASIC14.67□□□□□ -0.06
COL7A1Q02388 NBPF21P-201ENST00000425093 1451 ntBASIC14.67□□□□□ -0.06
COL7A1Q02388 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC14.67□□□□□ -0.06
COL7A1Q02388 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC14.67□□□□□ -0.06
COL7A1Q02388 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC14.67□□□□□ -0.06
COL7A1Q02388 AP000550.4-202ENST00000639755 178 ntBASIC14.67□□□□□ -0.06
COL7A1Q02388 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC14.67□□□□□ -0.06
COL7A1Q02388 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
COL7A1Q02388 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
COL7A1Q02388 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
COL7A1Q02388 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC14.67□□□□□ -0.06
COL7A1Q02388 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL7A1Q02388 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC14.67□□□□□ -0.06
COL7A1Q02388 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC14.66□□□□□ -0.06
COL7A1Q02388 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC14.66□□□□□ -0.06
COL7A1Q02388 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL7A1Q02388 AL137013.1-201ENST00000432946 1228 ntBASIC14.66□□□□□ -0.06
COL7A1Q02388 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC14.66□□□□□ -0.06
COL7A1Q02388 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL7A1Q02388 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC14.66□□□□□ -0.06
COL7A1Q02388 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL7A1Q02388 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL7A1Q02388 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
COL7A1Q02388 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL7A1Q02388 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC14.66□□□□□ -0.06
COL7A1Q02388 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC14.66□□□□□ -0.06
COL7A1Q02388 AC063952.2-201ENST00000498792 1227 ntBASIC14.66□□□□□ -0.06
COL7A1Q02388 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC14.66□□□□□ -0.06
COL7A1Q02388 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC14.66□□□□□ -0.06
COL7A1Q02388 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC14.66□□□□□ -0.06
COL7A1Q02388 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC14.66□□□□□ -0.06
COL7A1Q02388 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL7A1Q02388 FAM99A-202ENST00000538190 1989 ntBASIC14.66□□□□□ -0.06
COL7A1Q02388 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
COL7A1Q02388 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL7A1Q02388 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
COL7A1Q02388 AC022616.7-201ENST00000525383 220 ntBASIC14.65□□□□□ -0.06
COL7A1Q02388 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC14.65□□□□□ -0.06
COL7A1Q02388 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC14.65□□□□□ -0.06
COL7A1Q02388 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC14.65□□□□□ -0.06
COL7A1Q02388 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC14.65□□□□□ -0.06
COL7A1Q02388 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC14.65□□□□□ -0.06
COL7A1Q02388 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC14.65□□□□□ -0.06
COL7A1Q02388 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC14.65□□□□□ -0.06
COL7A1Q02388 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL7A1Q02388 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL7A1Q02388 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
COL7A1Q02388 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC14.65□□□□□ -0.06
COL7A1Q02388 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL7A1Q02388 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL7A1Q02388 FAM8A6P-201ENST00000407496 1135 ntBASIC14.65□□□□□ -0.06
COL7A1Q02388 AK4P3-201ENST00000418260 669 ntBASIC14.65□□□□□ -0.06
COL7A1Q02388 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL7A1Q02388 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC14.65□□□□□ -0.06
COL7A1Q02388 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
COL7A1Q02388 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC14.65□□□□□ -0.06
COL7A1Q02388 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL7A1Q02388 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
COL7A1Q02388 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC14.65□□□□□ -0.06
COL7A1Q02388 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC14.65□□□□□ -0.06
COL7A1Q02388 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL7A1Q02388 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL7A1Q02388 STK25-205ENST00000405883 1904 ntTSL 2 BASIC14.65□□□□□ -0.06
COL7A1Q02388 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL7A1Q02388 AL031133.1-201ENST00000406807 723 ntBASIC14.65□□□□□ -0.06
COL7A1Q02388 LGALS8-AS1-201ENST00000487567 1457 ntBASIC14.65□□□□□ -0.06
COL7A1Q02388 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
COL7A1Q02388 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL7A1Q02388 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
COL7A1Q02388 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL7A1Q02388 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL7A1Q02388 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC14.64□□□□□ -0.07
COL7A1Q02388 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL7A1Q02388 PRR31-201ENST00000371629 978 ntTSL 2 BASIC14.64□□□□□ -0.07
COL7A1Q02388 COPS8-203ENST00000409334 794 ntTSL 5 BASIC14.64□□□□□ -0.07
COL7A1Q02388 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL7A1Q02388 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
COL7A1Q02388 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC14.64□□□□□ -0.07
COL7A1Q02388 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC14.64□□□□□ -0.07
COL7A1Q02388 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL7A1Q02388 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL7A1Q02388 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
COL7A1Q02388 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL7A1Q02388 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL7A1Q02388 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL7A1Q02388 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms