Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CX3CR1P49238 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.82■□□□□ 0.44
CX3CR1P49238 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CX3CR1P49238 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.82■□□□□ 0.44
CX3CR1P49238 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
CX3CR1P49238 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC17.82■□□□□ 0.44
CX3CR1P49238 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC17.82■□□□□ 0.44
CX3CR1P49238 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 MYCNOS-205ENST00000641950 531 ntBASIC17.82■□□□□ 0.44
CX3CR1P49238 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CX3CR1P49238 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.82■□□□□ 0.44
CX3CR1P49238 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.82■□□□□ 0.44
CX3CR1P49238 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 RNF165-205ENST00000588679 2904 ntBASIC17.82■□□□□ 0.44
CX3CR1P49238 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.81■□□□□ 0.44
CX3CR1P49238 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CR1P49238 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CR1P49238 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CR1P49238 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CX3CR1P49238 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CR1P49238 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CR1P49238 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CX3CR1P49238 AC097381.1-201ENST00000429019 1296 ntBASIC17.81■□□□□ 0.44
CX3CR1P49238 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.81■□□□□ 0.44
CX3CR1P49238 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC17.81■□□□□ 0.44
CX3CR1P49238 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.81■□□□□ 0.44
CX3CR1P49238 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC17.81■□□□□ 0.44
CX3CR1P49238 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CX3CR1P49238 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CR1P49238 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CX3CR1P49238 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CR1P49238 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.81■□□□□ 0.44
CX3CR1P49238 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CX3CR1P49238 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CR1P49238 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CR1P49238 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CR1P49238 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC17.8■□□□□ 0.44
CX3CR1P49238 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CR1P49238 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CX3CR1P49238 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.8■□□□□ 0.44
CX3CR1P49238 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CR1P49238 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CX3CR1P49238 CDV3P1-201ENST00000471403 739 ntBASIC17.8■□□□□ 0.44
CX3CR1P49238 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.8■□□□□ 0.44
CX3CR1P49238 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC17.8■□□□□ 0.44
CX3CR1P49238 PLD4-205ENST00000553861 667 ntTSL 2 BASIC17.8■□□□□ 0.44
CX3CR1P49238 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC17.8■□□□□ 0.44
CX3CR1P49238 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.8■□□□□ 0.44
CX3CR1P49238 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CR1P49238 AL162377.1-201ENST00000618844 1793 ntBASIC17.8■□□□□ 0.44
CX3CR1P49238 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CX3CR1P49238 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CR1P49238 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CR1P49238 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CR1P49238 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CR1P49238 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
CX3CR1P49238 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.79■□□□□ 0.44
CX3CR1P49238 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CR1P49238 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CR1P49238 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CR1P49238 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CX3CR1P49238 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CR1P49238 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
CX3CR1P49238 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CX3CR1P49238 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CR1P49238 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CX3CR1P49238 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC17.79■□□□□ 0.44
CX3CR1P49238 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CR1P49238 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CR1P49238 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.79■□□□□ 0.44
CX3CR1P49238 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
CX3CR1P49238 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CX3CR1P49238 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CR1P49238 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CR1P49238 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CR1P49238 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.79■□□□□ 0.44
CX3CR1P49238 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC17.79■□□□□ 0.44
CX3CR1P49238 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CR1P49238 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CR1P49238 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CR1P49238 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CR1P49238 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CR1P49238 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.78■□□□□ 0.44
CX3CR1P49238 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CR1P49238 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CR1P49238 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.78■□□□□ 0.44
CX3CR1P49238 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms