Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
RFC4P35249 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
RFC4P35249 RBM17P1-201ENST00000453646 1190 ntBASIC25.71■■□□□ 1.71
RFC4P35249 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC25.71■■□□□ 1.71
RFC4P35249 FDX2-207ENST00000494368 584 ntTSL 4 BASIC25.71■■□□□ 1.71
RFC4P35249 F2R-202ENST00000505600 442 ntTSL 2 BASIC25.71■■□□□ 1.71
RFC4P35249 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC25.71■■□□□ 1.71
RFC4P35249 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
RFC4P35249 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
RFC4P35249 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
RFC4P35249 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
RFC4P35249 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
RFC4P35249 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
RFC4P35249 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
RFC4P35249 AC124283.5-201ENST00000624661 1809 ntBASIC25.7■■□□□ 1.71
RFC4P35249 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC25.7■■□□□ 1.7
RFC4P35249 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
RFC4P35249 P4HB-223ENST00000576390 439 ntTSL 4 BASIC25.7■■□□□ 1.7
RFC4P35249 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC25.7■■□□□ 1.7
RFC4P35249 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
RFC4P35249 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
RFC4P35249 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
RFC4P35249 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
RFC4P35249 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
RFC4P35249 MFF-203ENST00000349901 1716 ntTSL 2 BASIC25.69■■□□□ 1.7
RFC4P35249 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
RFC4P35249 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
RFC4P35249 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
RFC4P35249 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
RFC4P35249 AC005521.1-201ENST00000393351 872 ntBASIC25.69■■□□□ 1.7
RFC4P35249 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC25.69■■□□□ 1.7
RFC4P35249 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
RFC4P35249 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
RFC4P35249 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC25.69■■□□□ 1.7
RFC4P35249 C9orf163-202ENST00000624034 2573 ntBASIC25.69■■□□□ 1.7
RFC4P35249 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC25.69■■□□□ 1.7
RFC4P35249 KRT8P9-201ENST00000558927 1449 ntBASIC25.69■■□□□ 1.7
RFC4P35249 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RFC4P35249 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
RFC4P35249 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
RFC4P35249 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
RFC4P35249 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
RFC4P35249 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
RFC4P35249 AC079598.2-202ENST00000546624 1451 ntBASIC25.68■■□□□ 1.7
RFC4P35249 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
RFC4P35249 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC25.68■■□□□ 1.7
RFC4P35249 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC25.68■■□□□ 1.7
RFC4P35249 UNC93B2-201ENST00000285383 730 ntBASIC25.68■■□□□ 1.7
RFC4P35249 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
RFC4P35249 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC25.68■■□□□ 1.7
RFC4P35249 NUDT16P1-203ENST00000513809 620 ntBASIC25.68■■□□□ 1.7
RFC4P35249 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC25.68■■□□□ 1.7
RFC4P35249 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC25.68■■□□□ 1.7
RFC4P35249 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
RFC4P35249 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
RFC4P35249 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
RFC4P35249 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
RFC4P35249 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC25.67■■□□□ 1.7
RFC4P35249 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
RFC4P35249 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RFC4P35249 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
RFC4P35249 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC25.67■■□□□ 1.7
RFC4P35249 AC023632.3-201ENST00000521633 145 ntBASIC25.67■■□□□ 1.7
RFC4P35249 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
RFC4P35249 RMI2-205ENST00000576027 818 ntTSL 2 BASIC25.67■■□□□ 1.7
RFC4P35249 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC25.67■■□□□ 1.7
RFC4P35249 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC25.67■■□□□ 1.7
RFC4P35249 AP000525.1-201ENST00000608286 694 ntBASIC25.67■■□□□ 1.7
RFC4P35249 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC25.67■■□□□ 1.7
RFC4P35249 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RFC4P35249 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RFC4P35249 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
RFC4P35249 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RFC4P35249 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RFC4P35249 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC25.66■■□□□ 1.7
RFC4P35249 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC25.66■■□□□ 1.7
RFC4P35249 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC25.66■■□□□ 1.7
RFC4P35249 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC25.66■■□□□ 1.7
RFC4P35249 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC25.66■■□□□ 1.7
RFC4P35249 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC25.66■■□□□ 1.7
RFC4P35249 TPM1-226ENST00000560959 925 ntTSL 2 BASIC25.66■■□□□ 1.7
RFC4P35249 REXO1L10P-201ENST00000615707 1290 ntBASIC25.66■■□□□ 1.7
RFC4P35249 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
RFC4P35249 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
RFC4P35249 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
RFC4P35249 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RFC4P35249 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RFC4P35249 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RFC4P35249 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RFC4P35249 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RFC4P35249 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
RFC4P35249 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC25.65■■□□□ 1.7
RFC4P35249 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC25.65■■□□□ 1.7
RFC4P35249 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
RFC4P35249 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC25.65■■□□□ 1.7
RFC4P35249 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC25.65■■□□□ 1.7
RFC4P35249 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC25.65■■□□□ 1.7
RFC4P35249 GLDC-219ENST00000640208 420 ntTSL 2 BASIC25.65■■□□□ 1.7
RFC4P35249 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
RFC4P35249 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC25.65■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms