Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC12.82□□□□□ -0.36
APOBP04114 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC12.82□□□□□ -0.36
APOBP04114 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
APOBP04114 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
APOBP04114 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
APOBP04114 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
APOBP04114 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
APOBP04114 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC12.82□□□□□ -0.36
APOBP04114 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC12.81□□□□□ -0.36
APOBP04114 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC12.81□□□□□ -0.36
APOBP04114 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC12.81□□□□□ -0.36
APOBP04114 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC12.81□□□□□ -0.36
APOBP04114 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC12.81□□□□□ -0.36
APOBP04114 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 LTBR-211ENST00000543190 785 ntTSL 3 BASIC12.81□□□□□ -0.36
APOBP04114 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 BX664615.1-201ENST00000443558 458 ntBASIC12.81□□□□□ -0.36
APOBP04114 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC12.81□□□□□ -0.36
APOBP04114 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC12.81□□□□□ -0.36
APOBP04114 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC12.81□□□□□ -0.36
APOBP04114 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC12.81□□□□□ -0.36
APOBP04114 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC12.81□□□□□ -0.36
APOBP04114 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC12.81□□□□□ -0.36
APOBP04114 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC12.81□□□□□ -0.36
APOBP04114 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
APOBP04114 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
APOBP04114 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
APOBP04114 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
APOBP04114 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
APOBP04114 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC12.8□□□□□ -0.36
APOBP04114 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
APOBP04114 CLN6-204ENST00000564752 900 ntTSL 3 BASIC12.8□□□□□ -0.36
APOBP04114 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC12.8□□□□□ -0.36
APOBP04114 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
APOBP04114 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC12.8□□□□□ -0.36
APOBP04114 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
APOBP04114 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
APOBP04114 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC12.8□□□□□ -0.36
APOBP04114 FAM87A-204ENST00000613235 858 ntBASIC12.8□□□□□ -0.36
APOBP04114 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
APOBP04114 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC12.8□□□□□ -0.36
APOBP04114 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
APOBP04114 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC12.8□□□□□ -0.36
APOBP04114 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
APOBP04114 FAM8A6P-201ENST00000407496 1135 ntBASIC12.8□□□□□ -0.36
APOBP04114 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
APOBP04114 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC12.8□□□□□ -0.36
APOBP04114 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC12.8□□□□□ -0.36
APOBP04114 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
APOBP04114 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
APOBP04114 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
APOBP04114 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
APOBP04114 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 AL031133.1-201ENST00000406807 723 ntBASIC12.79□□□□□ -0.36
APOBP04114 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC12.79□□□□□ -0.36
APOBP04114 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
APOBP04114 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC12.79□□□□□ -0.36
APOBP04114 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
APOBP04114 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
APOBP04114 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
APOBP04114 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC12.79□□□□□ -0.36
APOBP04114 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
APOBP04114 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
APOBP04114 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
APOBP04114 AC027702.1-201ENST00000563810 1770 ntBASIC12.79□□□□□ -0.36
APOBP04114 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
APOBP04114 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
APOBP04114 TREX2-204ENST00000370212 861 ntTSL 5 BASIC12.78□□□□□ -0.36
APOBP04114 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
APOBP04114 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
APOBP04114 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC12.78□□□□□ -0.36
APOBP04114 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms