Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 GATM-206ENST00000558336 1522 ntTSL 2 BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 NARF-205ENST00000412079 1760 ntTSL 5 BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HLA-DQA1P01909 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 STX5-203ENST00000394690 1568 ntTSL 5 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 TK2-202ENST00000417693 1046 ntTSL 2 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
HLA-DQA1P01909 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 AC239859.2-201ENST00000444165 318 ntBASIC15.24■□□□□ 0.03
HLA-DQA1P01909 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 AL499627.2-201ENST00000606283 725 ntBASIC15.24■□□□□ 0.03
HLA-DQA1P01909 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
HLA-DQA1P01909 LBX2-AS1-202ENST00000603175 2083 ntBASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms