Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK1Q9Y566 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK1Q9Y566 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.49■□□□□ 0.55
SHANK1Q9Y566 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 ECEL1P1-201ENST00000373592 1742 ntBASIC18.48■□□□□ 0.55
SHANK1Q9Y566 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 C2orf69P4-201ENST00000565394 541 ntBASIC18.48■□□□□ 0.55
SHANK1Q9Y566 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC18.48■□□□□ 0.55
SHANK1Q9Y566 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SHANK1Q9Y566 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 AL137060.1-201ENST00000618151 2648 ntBASIC18.46■□□□□ 0.55
SHANK1Q9Y566 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK1Q9Y566 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
SHANK1Q9Y566 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 AC080038.3-201ENST00000623346 1952 ntBASIC18.45■□□□□ 0.54
SHANK1Q9Y566 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms