Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.03■□□□□ 0.96
PCDH9Q9HC56 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
PCDH9Q9HC56 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.03■□□□□ 0.96
PCDH9Q9HC56 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.03■□□□□ 0.96
PCDH9Q9HC56 PCDHAC2-203ENST00000615316 3011 ntBASIC21.03■□□□□ 0.96
PCDH9Q9HC56 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PCDH9Q9HC56 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
PCDH9Q9HC56 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 AC112907.3-201ENST00000577781 2400 ntBASIC21.02■□□□□ 0.96
PCDH9Q9HC56 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDH9Q9HC56 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
PCDH9Q9HC56 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
PCDH9Q9HC56 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
PCDH9Q9HC56 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
PCDH9Q9HC56 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDH9Q9HC56 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDH9Q9HC56 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDH9Q9HC56 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCDH9Q9HC56 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.01■□□□□ 0.95
PCDH9Q9HC56 AC116050.2-201ENST00000612102 1779 ntBASIC21.01■□□□□ 0.95
PCDH9Q9HC56 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDH9Q9HC56 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.01■□□□□ 0.95
PCDH9Q9HC56 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDH9Q9HC56 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.01■□□□□ 0.95
PCDH9Q9HC56 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDH9Q9HC56 AC092437.1-201ENST00000624794 1048 ntBASIC21.01■□□□□ 0.95
PCDH9Q9HC56 MIR2861-201ENST00000636310 90 ntBASIC21.01■□□□□ 0.95
PCDH9Q9HC56 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.01■□□□□ 0.95
PCDH9Q9HC56 AFG3L1P-217ENST00000557444 2447 ntBASIC21.01■□□□□ 0.95
PCDH9Q9HC56 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
PCDH9Q9HC56 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDH9Q9HC56 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21■□□□□ 0.95
PCDH9Q9HC56 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
PCDH9Q9HC56 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21■□□□□ 0.95
PCDH9Q9HC56 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PCDH9Q9HC56 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21■□□□□ 0.95
PCDH9Q9HC56 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21■□□□□ 0.95
PCDH9Q9HC56 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21■□□□□ 0.95
PCDH9Q9HC56 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
PCDH9Q9HC56 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDH9Q9HC56 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PCDH9Q9HC56 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PCDH9Q9HC56 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
PCDH9Q9HC56 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21■□□□□ 0.95
PCDH9Q9HC56 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21■□□□□ 0.95
PCDH9Q9HC56 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDH9Q9HC56 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDH9Q9HC56 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PCDH9Q9HC56 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDH9Q9HC56 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDH9Q9HC56 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.99■□□□□ 0.95
PCDH9Q9HC56 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.99■□□□□ 0.95
PCDH9Q9HC56 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
PCDH9Q9HC56 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.99■□□□□ 0.95
PCDH9Q9HC56 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.99■□□□□ 0.95
PCDH9Q9HC56 MFSD11-216ENST00000590393 1141 ntBASIC20.99■□□□□ 0.95
PCDH9Q9HC56 BID-214ENST00000617586 542 ntTSL 5 BASIC20.99■□□□□ 0.95
PCDH9Q9HC56 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PCDH9Q9HC56 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.99■□□□□ 0.95
PCDH9Q9HC56 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDH9Q9HC56 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDH9Q9HC56 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.98■□□□□ 0.95
PCDH9Q9HC56 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 RBM17P2-201ENST00000616397 1405 ntBASIC20.98■□□□□ 0.95
PCDH9Q9HC56 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms