Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 POU5F1P4-201ENST00000413175 1085 ntBASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 RARRES2P11-201ENST00000635158 484 ntBASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC28BQ9BUN5 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC28BQ9BUN5 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC28BQ9BUN5 AC125437.2-201ENST00000625180 2167 ntBASIC19.77■□□□□ 0.75
CCDC28BQ9BUN5 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC28BQ9BUN5 AC116562.4-201ENST00000641316 2276 ntBASIC19.77■□□□□ 0.75
CCDC28BQ9BUN5 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 TNXA-203ENST00000507684 2038 ntBASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 AC008175.2-201ENST00000612840 297 ntBASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 TSPY26P-201ENST00000476365 1326 ntBASIC19.76■□□□□ 0.75
CCDC28BQ9BUN5 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 AC024257.2-201ENST00000549699 147 ntBASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC28BQ9BUN5 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC28BQ9BUN5 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 AL136162.1-201ENST00000607711 1078 ntBASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CCDC28BQ9BUN5 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms