Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.68■□□□□ 0.58
TIMP4Q99727 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.68■□□□□ 0.58
TIMP4Q99727 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.68■□□□□ 0.58
TIMP4Q99727 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.67■□□□□ 0.58
TIMP4Q99727 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TIMP4Q99727 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TIMP4Q99727 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TIMP4Q99727 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TIMP4Q99727 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TIMP4Q99727 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TIMP4Q99727 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
TIMP4Q99727 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.67■□□□□ 0.58
TIMP4Q99727 FAM21FP-204ENST00000608637 956 ntBASIC18.67■□□□□ 0.58
TIMP4Q99727 AC092118.2-201ENST00000613495 667 ntBASIC18.67■□□□□ 0.58
TIMP4Q99727 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TIMP4Q99727 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.67■□□□□ 0.58
TIMP4Q99727 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TIMP4Q99727 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TIMP4Q99727 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
TIMP4Q99727 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TIMP4Q99727 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.66■□□□□ 0.58
TIMP4Q99727 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.66■□□□□ 0.58
TIMP4Q99727 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.66■□□□□ 0.58
TIMP4Q99727 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
TIMP4Q99727 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
TIMP4Q99727 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TIMP4Q99727 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.66■□□□□ 0.58
TIMP4Q99727 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TIMP4Q99727 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.65■□□□□ 0.58
TIMP4Q99727 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TIMP4Q99727 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TIMP4Q99727 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.65■□□□□ 0.58
TIMP4Q99727 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TIMP4Q99727 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.65■□□□□ 0.58
TIMP4Q99727 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TIMP4Q99727 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.65■□□□□ 0.58
TIMP4Q99727 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.65■□□□□ 0.58
TIMP4Q99727 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.65■□□□□ 0.58
TIMP4Q99727 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TIMP4Q99727 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
TIMP4Q99727 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.65■□□□□ 0.58
TIMP4Q99727 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
TIMP4Q99727 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.65■□□□□ 0.58
TIMP4Q99727 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
TIMP4Q99727 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TIMP4Q99727 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
TIMP4Q99727 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TIMP4Q99727 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.65■□□□□ 0.58
TIMP4Q99727 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.64■□□□□ 0.58
TIMP4Q99727 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.58
TIMP4Q99727 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
TIMP4Q99727 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TIMP4Q99727 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TIMP4Q99727 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.64■□□□□ 0.58
TIMP4Q99727 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
TIMP4Q99727 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TIMP4Q99727 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
TIMP4Q99727 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.64■□□□□ 0.57
TIMP4Q99727 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
TIMP4Q99727 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TIMP4Q99727 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TIMP4Q99727 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.64■□□□□ 0.57
TIMP4Q99727 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
TIMP4Q99727 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TIMP4Q99727 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.64■□□□□ 0.57
TIMP4Q99727 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TIMP4Q99727 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TIMP4Q99727 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
TIMP4Q99727 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.64■□□□□ 0.57
TIMP4Q99727 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TIMP4Q99727 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.63■□□□□ 0.57
TIMP4Q99727 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
TIMP4Q99727 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TIMP4Q99727 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
TIMP4Q99727 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TIMP4Q99727 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.63■□□□□ 0.57
TIMP4Q99727 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.63■□□□□ 0.57
TIMP4Q99727 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.63■□□□□ 0.57
TIMP4Q99727 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.63■□□□□ 0.57
TIMP4Q99727 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.63■□□□□ 0.57
TIMP4Q99727 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TIMP4Q99727 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TIMP4Q99727 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TIMP4Q99727 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.62■□□□□ 0.57
TIMP4Q99727 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms