Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VPS13AQ96RL7 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VPS13AQ96RL7 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS13AQ96RL7 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.33■□□□□ 0.84
VPS13AQ96RL7 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
VPS13AQ96RL7 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VPS13AQ96RL7 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VPS13AQ96RL7 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.33■□□□□ 0.84
VPS13AQ96RL7 ECEL1P2-202ENST00000465689 757 ntBASIC20.33■□□□□ 0.84
VPS13AQ96RL7 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VPS13AQ96RL7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
VPS13AQ96RL7 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 CDV3P1-201ENST00000471403 739 ntBASIC20.32■□□□□ 0.84
VPS13AQ96RL7 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 AC116050.2-201ENST00000612102 1779 ntBASIC20.32■□□□□ 0.84
VPS13AQ96RL7 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.32■□□□□ 0.84
VPS13AQ96RL7 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS13AQ96RL7 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS13AQ96RL7 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS13AQ96RL7 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS13AQ96RL7 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
VPS13AQ96RL7 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS13AQ96RL7 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
VPS13AQ96RL7 AL450487.1-201ENST00000426799 995 ntBASIC20.31■□□□□ 0.84
VPS13AQ96RL7 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS13AQ96RL7 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC20.31■□□□□ 0.84
VPS13AQ96RL7 CYP21A1P-202ENST00000354927 1481 ntBASIC20.31■□□□□ 0.84
VPS13AQ96RL7 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS13AQ96RL7 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS13AQ96RL7 AP000550.4-202ENST00000639755 178 ntBASIC20.3■□□□□ 0.84
VPS13AQ96RL7 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.29■□□□□ 0.84
VPS13AQ96RL7 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS13AQ96RL7 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.29■□□□□ 0.84
VPS13AQ96RL7 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS13AQ96RL7 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS13AQ96RL7 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS13AQ96RL7 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS13AQ96RL7 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS13AQ96RL7 FITM1-202ENST00000559294 800 ntBASIC20.29■□□□□ 0.84
VPS13AQ96RL7 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS13AQ96RL7 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS13AQ96RL7 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
VPS13AQ96RL7 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 AC073195.1-201ENST00000607241 877 ntBASIC20.28■□□□□ 0.84
VPS13AQ96RL7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 AC022616.7-201ENST00000525383 220 ntBASIC20.28■□□□□ 0.84
VPS13AQ96RL7 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.28■□□□□ 0.84
VPS13AQ96RL7 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms