Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC21.4■■□□□ 1.023e-10■■□□□ 14.2
DDX55Q8NHQ9 YIF1B-206ENST00000586319 936 ntTSL 321.13■□□□□ 0.973e-10■■□□□ 14.2
DDX55Q8NHQ9 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.923e-10■■□□□ 14.2
DDX55Q8NHQ9 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC20.23■□□□□ 0.833e-10■■□□□ 14.2
DDX55Q8NHQ9 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC18.97■□□□□ 0.633e-10■■□□□ 14.2
DDX55Q8NHQ9 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC18.4■□□□□ 0.543e-10■■□□□ 14.2
DDX55Q8NHQ9 YIF1B-210ENST00000589151 431 ntTSL 218.35■□□□□ 0.533e-10■■□□□ 14.2
DDX55Q8NHQ9 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC18.33■□□□□ 0.523e-10■■□□□ 14.2
DDX55Q8NHQ9 ATP6V0A1-207ENST00000585828 2139 ntTSL 1 (best)17.04■□□□□ 0.328e-20■■□□□ 14.2
DDX55Q8NHQ9 GAS5-209ENST00000430245 723 ntTSL 3 BASIC17.04■□□□□ 0.326e-37■■□□□ 14.2
DDX55Q8NHQ9 ATP6V0A1-214ENST00000587797 1878 ntTSL 215.84■□□□□ 0.138e-20■■□□□ 14.2
DDX55Q8NHQ9 MYO18A-207ENST00000530254 6479 ntTSL 1 (best)14.49□□□□□ -0.091e-8■■□□□ 14.2
DDX55Q8NHQ9 TIAF1-201ENST00000359450 5337 ntAPPRIS P1 BASIC13.49□□□□□ -0.251e-8■■□□□ 14.2
DDX55Q8NHQ9 MYO18A-205ENST00000529578 2667 ntTSL 213.45□□□□□ -0.261e-8■■□□□ 14.2
DDX55Q8NHQ9 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC13.31□□□□□ -0.288e-41■■□□□ 14.2
DDX55Q8NHQ9 MYO18A-202ENST00000527372 9992 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.441e-8■■□□□ 14.2
DDX55Q8NHQ9 MYO18A-223ENST00000628822 7501 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.491e-8■■□□□ 14.2
DDX55Q8NHQ9 MYO18A-209ENST00000531253 7504 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.491e-8■■□□□ 14.2
DDX55Q8NHQ9 ATP6V0A1-205ENST00000544137 3047 ntTSL 1 (best) BASIC11.83□□□□□ -0.528e-20■■□□□ 14.2
DDX55Q8NHQ9 MYO18A-214ENST00000533112 7522 ntTSL 1 (best) BASIC11.71□□□□□ -0.531e-8■■□□□ 14.2
DDX55Q8NHQ9 GAS5-224ENST00000454068 688 ntTSL 5 BASIC11.7□□□□□ -0.548e-41■■□□□ 14.2
DDX55Q8NHQ9 GAS5-214ENST00000436656 822 ntTSL 311.7□□□□□ -0.546e-37■■□□□ 14.2
DDX55Q8NHQ9 GAS5-216ENST00000443799 897 ntTSL 511.7□□□□□ -0.546e-37■■□□□ 14.2
DDX55Q8NHQ9 GAS5-203ENST00000416952 799 ntTSL 211.11□□□□□ -0.636e-37■■□□□ 14.2
DDX55Q8NHQ9 ATP6V0A1-202ENST00000343619 4128 ntAPPRIS ALT1 TSL 1 (best) BASIC10.72□□□□□ -0.698e-20■■□□□ 14.2
DDX55Q8NHQ9 GAS5-210ENST00000431268 1698 ntTSL 210.69□□□□□ -0.76e-37■■□□□ 14.2
DDX55Q8NHQ9 ATP6V0A1-225ENST00000592831 4652 nt10.62□□□□□ -0.718e-20■■□□□ 14.2
DDX55Q8NHQ9 POLR2K-201ENST00000353107 998 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.734e-10■■□□□ 14.2
DDX55Q8NHQ9 ATP6V0A1-201ENST00000264649 4110 ntAPPRIS P4 TSL 1 (best) BASIC10.42□□□□□ -0.748e-20■■□□□ 14.2
DDX55Q8NHQ9 POLR2K-202ENST00000519765 1021 ntTSL 59.97□□□□□ -0.814e-10■■□□□ 14.2
DDX55Q8NHQ9 GAS5-220ENST00000449589 712 ntTSL 39.73□□□□□ -0.856e-37■■□□□ 14.2
DDX55Q8NHQ9 GAS5-219ENST00000449289 542 ntTSL 3 BASIC9.73□□□□□ -0.856e-37■■□□□ 14.2
DDX55Q8NHQ9 GAS5-226ENST00000455838 632 ntTSL 29.73□□□□□ -0.856e-37■■□□□ 14.2
DDX55Q8NHQ9 GAS5-211ENST00000432536 959 ntTSL 2 BASIC9.09□□□□□ -0.958e-41■■□□□ 14.2
DDX55Q8NHQ9 GAS5-227ENST00000456293 583 ntTSL 38.73□□□□□ -1.016e-37■■□□□ 14.2
DDX55Q8NHQ9 GAS5-228ENST00000456812 723 ntTSL 38.34□□□□□ -1.078e-41■■□□□ 14.2
DDX55Q8NHQ9 GAS5-218ENST00000448718 565 ntTSL 2 BASIC7.27□□□□□ -1.258e-41■■□□□ 14.2
DDX55Q8NHQ9 GAS5-202ENST00000414075 413 ntTSL 2 BASIC7.24□□□□□ -1.254e-10■■□□□ 14.2
DDX55Q8NHQ9 GAS5-206ENST00000422183 745 ntTSL 27.13□□□□□ -1.278e-41■■□□□ 14.2
DDX55Q8NHQ9 GAS5-201ENST00000412059 979 ntTSL 56.9□□□□□ -1.36e-37■■□□□ 14.2
DDX55Q8NHQ9 GAS5-215ENST00000442067 1114 ntTSL 25.53□□□□□ -1.528e-41■■□□□ 14.2
DDX55Q8NHQ9 GAS5-205ENST00000422008 497 ntTSL 35.51□□□□□ -1.538e-41■■□□□ 14.2
DDX55Q8NHQ9 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.61□□□□□ -1.676e-37■■□□□ 14.2
DDX55Q8NHQ9 GAS5-213ENST00000436285 772 ntTSL 24.06□□□□□ -1.768e-41■■□□□ 14.2
DDX55Q8NHQ9 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.57□□□□□ -1.846e-37■■□□□ 14.2
DDX55Q8NHQ9 CFL1-212ENST00000531413 636 ntTSL 3 BASIC20.45■□□□□ 0.861e-25■■□□□ 14.2
DDX55Q8NHQ9 CFL1-214ENST00000534769 758 ntTSL 2 BASIC17.76■□□□□ 0.431e-25■■□□□ 14.2
DDX55Q8NHQ9 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.643e-21■■□□□ 14.2
DDX55Q8NHQ9 NCLN-203ENST00000587740 1210 ntTSL 1 (best)19.68■□□□□ 0.749e-9■■□□□ 14.2
DDX55Q8NHQ9 NCLN-208ENST00000592737 2735 ntTSL 317.79■□□□□ 0.449e-9■■□□□ 14.2
DDX55Q8NHQ9 NCLN-206ENST00000591062 460 ntTSL 517.5■□□□□ 0.399e-9■■□□□ 14.2
DDX55Q8NHQ9 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.139e-9■■□□□ 14.2
DDX55Q8NHQ9 HGS-210ENST00000573320 547 ntTSL 318.51■□□□□ 0.554e-11■■□□□ 14.2
DDX55Q8NHQ9 HGS-211ENST00000573949 461 ntTSL 516.21■□□□□ 0.194e-11■■□□□ 14.2
DDX55Q8NHQ9 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.661e-12■■□□□ 14.2
DDX55Q8NHQ9 POLR1D-210ENST00000627604 565 ntTSL 426.67■■□□□ 1.861e-12■■□□□ 14.2
DDX55Q8NHQ9 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC23.21■■□□□ 1.311e-12■■□□□ 14.2
DDX55Q8NHQ9 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.8■□□□□ 0.761e-12■■□□□ 14.2
DDX55Q8NHQ9 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.16■□□□□ 0.661e-12■■□□□ 14.2
DDX55Q8NHQ9 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC19.14■□□□□ 0.651e-12■■□□□ 14.2
DDX55Q8NHQ9 POLR1D-204ENST00000465887 2118 ntTSL 218.4■□□□□ 0.541e-12■■□□□ 14.2
DDX55Q8NHQ9 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.33■□□□□ 0.371e-12■■□□□ 14.2
DDX55Q8NHQ9 POLR1D-206ENST00000489647 1723 ntTSL 1 (best) BASIC12.37□□□□□ -0.431e-12■■□□□ 14.2
DDX55Q8NHQ9 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.85□□□□□ -1.311e-12■■□□□ 14.2
DDX55Q8NHQ9 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC6.18□□□□□ -1.421e-12■■□□□ 14.2
DDX55Q8NHQ9 POLR1D-222ENST00000637389 129 ntTSL 50.99□□□□□ -2.251e-12■■□□□ 14.2
DDX55Q8NHQ9 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC25.57■■□□□ 1.685e-7■■□□□ 14.2
DDX55Q8NHQ9 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC25.03■■□□□ 1.65e-7■■□□□ 14.2
DDX55Q8NHQ9 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.535e-7■■□□□ 14.2
DDX55Q8NHQ9 CERS4-214ENST00000595722 1826 ntTSL 1 (best)23.1■■□□□ 1.295e-7■■□□□ 14.2
DDX55Q8NHQ9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.195e-7■■□□□ 14.2
DDX55Q8NHQ9 CERS4-215ENST00000599275 710 ntTSL 221.65■■□□□ 1.065e-7■■□□□ 14.2
DDX55Q8NHQ9 CERS4-202ENST00000557925 2401 ntTSL 516.19■□□□□ 0.185e-7■■□□□ 14.2
DDX55Q8NHQ9 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.65e-7■■□□□ 14.2
DDX55Q8NHQ9 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.563e-7■■□□□ 14.2
DDX55Q8NHQ9 TNFRSF19-204ENST00000403372 4277 ntAPPRIS ALT2 TSL 2 BASIC8.69□□□□□ -1.021e-6■■□□□ 14.2
DDX55Q8NHQ9 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC8.06□□□□□ -1.121e-6■■□□□ 14.2
DDX55Q8NHQ9 ADNP-203ENST00000396029 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.232e-7■■□□□ 14.2
DDX55Q8NHQ9 ADNP-204ENST00000396032 4581 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.742e-7■■□□□ 14.2
DDX55Q8NHQ9 ADNP-206ENST00000621696 6224 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.82e-7■■□□□ 14.2
DDX55Q8NHQ9 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.162e-7■■□□□ 14.2
DDX55Q8NHQ9 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.592e-7■■□□□ 14.2
DDX55Q8NHQ9 SEZ6L2-203ENST00000350527 3173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.461e-6■■□□□ 14.2
DDX55Q8NHQ9 SEZ6L2-202ENST00000346932 3015 ntTSL 1 (best) BASIC11.57□□□□□ -0.561e-6■■□□□ 14.2
DDX55Q8NHQ9 SEZ6L2-209ENST00000617533 3555 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.661e-6■■□□□ 14.2
DDX55Q8NHQ9 SEZ6L2-204ENST00000537485 3423 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.691e-6■■□□□ 14.2
DDX55Q8NHQ9 SEZ6L2-201ENST00000308713 3801 ntAPPRIS P4 TSL 1 (best) BASIC9.76□□□□□ -0.851e-6■■□□□ 14.2
DDX55Q8NHQ9 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.23■□□□□ 0.355e-12■■□□□ 14.2
DDX55Q8NHQ9 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.245e-12■■□□□ 14.2
DDX55Q8NHQ9 MIIP-207ENST00000498685 1392 ntTSL 221.4■■□□□ 1.022e-8■■□□□ 14.2
DDX55Q8NHQ9 MIIP-203ENST00000466860 1709 ntTSL 520.48■□□□□ 0.872e-8■■□□□ 14.2
DDX55Q8NHQ9 MIIP-202ENST00000460823 955 ntTSL 517.77■□□□□ 0.442e-8■■□□□ 14.2
DDX55Q8NHQ9 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC19.79■□□□□ 0.762e-19■■□□□ 14.2
DDX55Q8NHQ9 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.141e-6■■□□□ 14.2
DDX55Q8NHQ9 ANXA4-201ENST00000394295 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.342e-19■■□□□ 14.2
DDX55Q8NHQ9 ANXA4-209ENST00000477632 3949 ntTSL 1 (best)9.02□□□□□ -0.972e-19■■□□□ 14.2
DDX55Q8NHQ9 ANXA4-207ENST00000471395 4418 ntTSL 1 (best)5.08□□□□□ -1.62e-19■■□□□ 14.2
DDX55Q8NHQ9 LRPPRC-201ENST00000260665 6335 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.22e-6■■□□□ 14.2
DDX55Q8NHQ9 NEU4-215ENST00000488997 541 ntTSL 426.53■■□□□ 1.842e-17■■□□□ 14.2
DDX55Q8NHQ9 NEU4-214ENST00000476542 536 ntTSL 225.73■■□□□ 1.712e-17■■□□□ 14.2
Retrieved 100 of 15,504 protein–RNA pairs in 94.6 ms