Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 FAM8A6P-201ENST00000407496 1135 ntBASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 F2R-202ENST00000505600 442 ntTSL 2 BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC24.33■■□□□ 1.49
SMC1BQ8NDV3 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
SMC1BQ8NDV3 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC24.33■■□□□ 1.48
SMC1BQ8NDV3 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 C2orf69P3-201ENST00000565542 1120 ntBASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC24.32■■□□□ 1.48
SMC1BQ8NDV3 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 AC004264.1-201ENST00000608354 794 ntBASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC24.31■■□□□ 1.48
SMC1BQ8NDV3 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
SMC1BQ8NDV3 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SMC1BQ8NDV3 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC24.3■■□□□ 1.48
SMC1BQ8NDV3 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC24.3■■□□□ 1.48
SMC1BQ8NDV3 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
SMC1BQ8NDV3 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC24.3■■□□□ 1.48
SMC1BQ8NDV3 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC24.3■■□□□ 1.48
SMC1BQ8NDV3 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SMC1BQ8NDV3 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
SMC1BQ8NDV3 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
SMC1BQ8NDV3 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SMC1BQ8NDV3 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 LTK-203ENST00000453182 2412 ntTSL 2 BASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 ECEL1P2-202ENST00000465689 757 ntBASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 CR392000.1-201ENST00000624770 1228 ntBASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 CLN6-214ENST00000636314 442 ntTSL 3 BASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SMC1BQ8NDV3 C11orf96-202ENST00000528572 1834 ntBASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 EGLN1P1-201ENST00000531623 762 ntBASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC24.28■■□□□ 1.48
SMC1BQ8NDV3 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms