Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.19■□□□□ 0.98
NPAS3Q8IXF0 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPAS3Q8IXF0 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS3Q8IXF0 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS3Q8IXF0 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.18■□□□□ 0.98
NPAS3Q8IXF0 FAM210CP-201ENST00000445714 574 ntBASIC21.18■□□□□ 0.98
NPAS3Q8IXF0 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS3Q8IXF0 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS3Q8IXF0 KRT17P2-201ENST00000300992 1314 ntBASIC21.18■□□□□ 0.98
NPAS3Q8IXF0 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
NPAS3Q8IXF0 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
NPAS3Q8IXF0 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS3Q8IXF0 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS3Q8IXF0 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 LINC01023-201ENST00000606054 436 ntBASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 AL135905.2-201ENST00000584934 1404 ntBASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS3Q8IXF0 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 AP001412.1-201ENST00000608405 714 ntBASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 GUSBP5-202ENST00000510805 1989 ntBASIC21.16■□□□□ 0.98
NPAS3Q8IXF0 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 AC113410.3-201ENST00000623366 203 ntBASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS3Q8IXF0 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.14■□□□□ 0.98
NPAS3Q8IXF0 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.14■□□□□ 0.98
NPAS3Q8IXF0 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPAS3Q8IXF0 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPAS3Q8IXF0 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPAS3Q8IXF0 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.14■□□□□ 0.97
NPAS3Q8IXF0 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.14■□□□□ 0.97
NPAS3Q8IXF0 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.14■□□□□ 0.97
NPAS3Q8IXF0 MIR4785-201ENST00000585005 73 ntBASIC21.14■□□□□ 0.97
NPAS3Q8IXF0 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPAS3Q8IXF0 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPAS3Q8IXF0 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPAS3Q8IXF0 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPAS3Q8IXF0 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NPAS3Q8IXF0 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.13■□□□□ 0.97
NPAS3Q8IXF0 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPAS3Q8IXF0 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
NPAS3Q8IXF0 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms