Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LDB1Q86U70 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
LDB1Q86U70 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.33■□□□□ 0.85
LDB1Q86U70 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LDB1Q86U70 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LDB1Q86U70 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LDB1Q86U70 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.33■□□□□ 0.85
LDB1Q86U70 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.33■□□□□ 0.84
LDB1Q86U70 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.33■□□□□ 0.84
LDB1Q86U70 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.33■□□□□ 0.84
LDB1Q86U70 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
LDB1Q86U70 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
LDB1Q86U70 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LDB1Q86U70 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LDB1Q86U70 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LDB1Q86U70 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.33■□□□□ 0.84
LDB1Q86U70 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LDB1Q86U70 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
LDB1Q86U70 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LDB1Q86U70 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.32■□□□□ 0.84
LDB1Q86U70 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.32■□□□□ 0.84
LDB1Q86U70 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
LDB1Q86U70 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.32■□□□□ 0.84
LDB1Q86U70 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.32■□□□□ 0.84
LDB1Q86U70 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LDB1Q86U70 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.32■□□□□ 0.84
LDB1Q86U70 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
LDB1Q86U70 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.32■□□□□ 0.84
LDB1Q86U70 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LDB1Q86U70 AC092720.2-201ENST00000602388 1665 ntBASIC20.32■□□□□ 0.84
LDB1Q86U70 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
LDB1Q86U70 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.31■□□□□ 0.84
LDB1Q86U70 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.31■□□□□ 0.84
LDB1Q86U70 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LDB1Q86U70 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB1Q86U70 AC068338.2-201ENST00000563278 1430 ntBASIC20.31■□□□□ 0.84
LDB1Q86U70 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LDB1Q86U70 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB1Q86U70 AC004911.1-201ENST00000416316 871 ntBASIC20.31■□□□□ 0.84
LDB1Q86U70 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.31■□□□□ 0.84
LDB1Q86U70 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.31■□□□□ 0.84
LDB1Q86U70 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB1Q86U70 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB1Q86U70 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB1Q86U70 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
LDB1Q86U70 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LDB1Q86U70 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB1Q86U70 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.31■□□□□ 0.84
LDB1Q86U70 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LDB1Q86U70 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.3■□□□□ 0.84
LDB1Q86U70 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDB1Q86U70 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
LDB1Q86U70 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDB1Q86U70 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.3■□□□□ 0.84
LDB1Q86U70 AC007322.4-201ENST00000509611 723 ntBASIC20.3■□□□□ 0.84
LDB1Q86U70 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.3■□□□□ 0.84
LDB1Q86U70 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.3■□□□□ 0.84
LDB1Q86U70 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.3■□□□□ 0.84
LDB1Q86U70 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LDB1Q86U70 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDB1Q86U70 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
LDB1Q86U70 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
LDB1Q86U70 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.29■□□□□ 0.84
LDB1Q86U70 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDB1Q86U70 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.29■□□□□ 0.84
LDB1Q86U70 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDB1Q86U70 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
LDB1Q86U70 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
LDB1Q86U70 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.29■□□□□ 0.84
LDB1Q86U70 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.29■□□□□ 0.84
LDB1Q86U70 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.29■□□□□ 0.84
LDB1Q86U70 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.29■□□□□ 0.84
LDB1Q86U70 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.29■□□□□ 0.84
LDB1Q86U70 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
LDB1Q86U70 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
LDB1Q86U70 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDB1Q86U70 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDB1Q86U70 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDB1Q86U70 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB1Q86U70 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.28■□□□□ 0.84
LDB1Q86U70 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
LDB1Q86U70 SMG8-203ENST00000578922 2178 ntBASIC20.28■□□□□ 0.84
LDB1Q86U70 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.28■□□□□ 0.84
LDB1Q86U70 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB1Q86U70 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB1Q86U70 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LDB1Q86U70 FAM21FP-204ENST00000608637 956 ntBASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms