Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF43Q68DV7 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
RNF43Q68DV7 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.32■■□□□ 1
RNF43Q68DV7 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF43Q68DV7 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.31■■□□□ 1
RNF43Q68DV7 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.31■■□□□ 1
RNF43Q68DV7 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
RNF43Q68DV7 AC010980.2-201ENST00000587099 1412 ntBASIC21.31■■□□□ 1
RNF43Q68DV7 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
RNF43Q68DV7 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
RNF43Q68DV7 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF43Q68DV7 RPS2P52-201ENST00000469610 820 ntBASIC21.31■■□□□ 1
RNF43Q68DV7 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.31■■□□□ 1
RNF43Q68DV7 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.31■■□□□ 1
RNF43Q68DV7 AC092118.2-201ENST00000613495 667 ntBASIC21.31■■□□□ 1
RNF43Q68DV7 AC100791.3-201ENST00000617619 330 ntBASIC21.31■■□□□ 1
RNF43Q68DV7 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.31■■□□□ 1
RNF43Q68DV7 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
RNF43Q68DV7 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
RNF43Q68DV7 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.31■■□□□ 1
RNF43Q68DV7 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF43Q68DV7 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
RNF43Q68DV7 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.31■■□□□ 1
RNF43Q68DV7 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF43Q68DV7 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF43Q68DV7 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.3■■□□□ 1
RNF43Q68DV7 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.3■■□□□ 1
RNF43Q68DV7 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF43Q68DV7 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.3■■□□□ 1
RNF43Q68DV7 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.3■■□□□ 1
RNF43Q68DV7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF43Q68DV7 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF43Q68DV7 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.3■■□□□ 1
RNF43Q68DV7 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
RNF43Q68DV7 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.3■■□□□ 1
RNF43Q68DV7 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.3■■□□□ 1
RNF43Q68DV7 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF43Q68DV7 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF43Q68DV7 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
RNF43Q68DV7 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
RNF43Q68DV7 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.29■■□□□ 1
RNF43Q68DV7 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF43Q68DV7 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF43Q68DV7 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF43Q68DV7 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
RNF43Q68DV7 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF43Q68DV7 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.29■■□□□ 1
RNF43Q68DV7 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.29■■□□□ 1
RNF43Q68DV7 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
RNF43Q68DV7 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.29■■□□□ 1
RNF43Q68DV7 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF43Q68DV7 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.29■■□□□ 1
RNF43Q68DV7 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.28■■□□□ 1
RNF43Q68DV7 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.28■■□□□ 1
RNF43Q68DV7 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
RNF43Q68DV7 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.28■■□□□ 1
RNF43Q68DV7 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF43Q68DV7 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
RNF43Q68DV7 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF43Q68DV7 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF43Q68DV7 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.28■■□□□ 1
RNF43Q68DV7 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.28■■□□□ 1
RNF43Q68DV7 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.28■■□□□ 1
RNF43Q68DV7 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.28■■□□□ 1
RNF43Q68DV7 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
RNF43Q68DV7 FEM1AP1-201ENST00000431297 1995 ntBASIC21.28■■□□□ 1
RNF43Q68DV7 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF43Q68DV7 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF43Q68DV7 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF43Q68DV7 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF43Q68DV7 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.28■■□□□ 1
RNF43Q68DV7 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
RNF43Q68DV7 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF43Q68DV7 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.27■■□□□ 1
RNF43Q68DV7 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
RNF43Q68DV7 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.27■■□□□ 1
RNF43Q68DV7 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.27■■□□□ 1
RNF43Q68DV7 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF43Q68DV7 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.27■■□□□ 1
RNF43Q68DV7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF43Q68DV7 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RNF43Q68DV7 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
RNF43Q68DV7 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RNF43Q68DV7 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RNF43Q68DV7 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.26■□□□□ 0.99
RNF43Q68DV7 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF43Q68DV7 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF43Q68DV7 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF43Q68DV7 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF43Q68DV7 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.26■□□□□ 0.99
RNF43Q68DV7 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF43Q68DV7 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF43Q68DV7 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
RNF43Q68DV7 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
RNF43Q68DV7 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.26■□□□□ 0.99
RNF43Q68DV7 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF43Q68DV7 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.26■□□□□ 0.99
RNF43Q68DV7 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.26■□□□□ 0.99
RNF43Q68DV7 CDV3P1-201ENST00000471403 739 ntBASIC21.26■□□□□ 0.99
RNF43Q68DV7 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms