Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC24.58■■□□□ 1.52
VPS53Q5VIR6 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 AC027702.1-201ENST00000563810 1770 ntBASIC24.57■■□□□ 1.52
VPS53Q5VIR6 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 AL355472.2-201ENST00000422958 438 ntBASIC24.57■■□□□ 1.52
VPS53Q5VIR6 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 AC069236.1-201ENST00000604339 616 ntBASIC24.57■■□□□ 1.52
VPS53Q5VIR6 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
VPS53Q5VIR6 AL121603.2-201ENST00000557373 2117 ntBASIC24.56■■□□□ 1.52
VPS53Q5VIR6 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 AC010980.2-201ENST00000587099 1412 ntBASIC24.56■■□□□ 1.52
VPS53Q5VIR6 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 AF201337.1-201ENST00000520239 748 ntBASIC24.56■■□□□ 1.52
VPS53Q5VIR6 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 AL121832.2-201ENST00000610979 668 ntBASIC24.56■■□□□ 1.52
VPS53Q5VIR6 GAMT-205ENST00000640762 751 ntTSL 5 BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
VPS53Q5VIR6 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC24.55■■□□□ 1.52
VPS53Q5VIR6 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
VPS53Q5VIR6 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC24.55■■□□□ 1.52
VPS53Q5VIR6 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC24.55■■□□□ 1.52
VPS53Q5VIR6 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC24.55■■□□□ 1.52
VPS53Q5VIR6 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC24.55■■□□□ 1.52
VPS53Q5VIR6 AC008694.1-202ENST00000636953 945 ntBASIC24.55■■□□□ 1.52
VPS53Q5VIR6 CYP21A1P-202ENST00000354927 1481 ntBASIC24.55■■□□□ 1.52
VPS53Q5VIR6 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC24.55■■□□□ 1.52
VPS53Q5VIR6 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC24.55■■□□□ 1.52
VPS53Q5VIR6 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC24.55■■□□□ 1.52
VPS53Q5VIR6 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC24.55■■□□□ 1.52
VPS53Q5VIR6 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
VPS53Q5VIR6 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
VPS53Q5VIR6 AP005212.1-201ENST00000581547 1997 ntBASIC24.54■■□□□ 1.52
VPS53Q5VIR6 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 HLA-L-209ENST00000420110 1011 ntBASIC24.54■■□□□ 1.52
VPS53Q5VIR6 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 PHB2-213ENST00000546111 858 ntTSL 2 BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 AC104771.1-201ENST00000603335 964 ntBASIC24.54■■□□□ 1.52
VPS53Q5VIR6 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
VPS53Q5VIR6 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 GPX1P1-201ENST00000388829 606 ntBASIC24.53■■□□□ 1.52
VPS53Q5VIR6 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 AL512625.2-201ENST00000417533 625 ntBASIC24.53■■□□□ 1.52
VPS53Q5VIR6 TSPY6P-201ENST00000448518 926 ntBASIC24.53■■□□□ 1.52
VPS53Q5VIR6 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 AC007225.1-201ENST00000566331 1836 ntBASIC24.53■■□□□ 1.52
VPS53Q5VIR6 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 GABARAPL3-202ENST00000624044 1851 ntBASIC24.53■■□□□ 1.52
VPS53Q5VIR6 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
VPS53Q5VIR6 AC073314.1-201ENST00000568729 2216 ntBASIC24.53■■□□□ 1.52
VPS53Q5VIR6 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC24.52■■□□□ 1.52
VPS53Q5VIR6 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
VPS53Q5VIR6 MED17-221ENST00000639724 2317 ntTSL 5 BASIC24.52■■□□□ 1.52
VPS53Q5VIR6 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
VPS53Q5VIR6 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC24.52■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms