Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
RC3H1Q5TC82 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
RC3H1Q5TC82 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
RC3H1Q5TC82 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC25.89■■□□□ 1.74
RC3H1Q5TC82 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
RC3H1Q5TC82 GOLGA2P6-201ENST00000340929 2049 ntBASIC25.89■■□□□ 1.74
RC3H1Q5TC82 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
RC3H1Q5TC82 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC25.89■■□□□ 1.74
RC3H1Q5TC82 KRT18P35-201ENST00000510488 1269 ntBASIC25.89■■□□□ 1.74
RC3H1Q5TC82 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC25.89■■□□□ 1.74
RC3H1Q5TC82 NBPF21P-201ENST00000425093 1451 ntBASIC25.89■■□□□ 1.73
RC3H1Q5TC82 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.73
RC3H1Q5TC82 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
RC3H1Q5TC82 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
RC3H1Q5TC82 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC25.88■■□□□ 1.73
RC3H1Q5TC82 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC25.88■■□□□ 1.73
RC3H1Q5TC82 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
RC3H1Q5TC82 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
RC3H1Q5TC82 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC25.88■■□□□ 1.73
RC3H1Q5TC82 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC25.88■■□□□ 1.73
RC3H1Q5TC82 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC25.88■■□□□ 1.73
RC3H1Q5TC82 AC145285.6-201ENST00000604632 637 ntBASIC25.88■■□□□ 1.73
RC3H1Q5TC82 AC073195.1-201ENST00000607241 877 ntBASIC25.88■■□□□ 1.73
RC3H1Q5TC82 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC25.88■■□□□ 1.73
RC3H1Q5TC82 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
RC3H1Q5TC82 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC25.88■■□□□ 1.73
RC3H1Q5TC82 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
RC3H1Q5TC82 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC25.88■■□□□ 1.73
RC3H1Q5TC82 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
RC3H1Q5TC82 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
RC3H1Q5TC82 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
RC3H1Q5TC82 FAM197Y1-201ENST00000421178 764 ntBASIC25.87■■□□□ 1.73
RC3H1Q5TC82 F2R-202ENST00000505600 442 ntTSL 2 BASIC25.87■■□□□ 1.73
RC3H1Q5TC82 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC25.87■■□□□ 1.73
RC3H1Q5TC82 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC25.87■■□□□ 1.73
RC3H1Q5TC82 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC25.87■■□□□ 1.73
RC3H1Q5TC82 AC092865.7-201ENST00000641832 219 ntBASIC25.87■■□□□ 1.73
RC3H1Q5TC82 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
RC3H1Q5TC82 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
RC3H1Q5TC82 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC25.87■■□□□ 1.73
RC3H1Q5TC82 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
RC3H1Q5TC82 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
RC3H1Q5TC82 FDX2-207ENST00000494368 584 ntTSL 4 BASIC25.86■■□□□ 1.73
RC3H1Q5TC82 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
RC3H1Q5TC82 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC25.86■■□□□ 1.73
RC3H1Q5TC82 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
RC3H1Q5TC82 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC25.86■■□□□ 1.73
RC3H1Q5TC82 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
RC3H1Q5TC82 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
RC3H1Q5TC82 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 TREX2-204ENST00000370212 861 ntTSL 5 BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC25.85■■□□□ 1.73
RC3H1Q5TC82 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC25.84■■□□□ 1.73
RC3H1Q5TC82 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
RC3H1Q5TC82 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
RC3H1Q5TC82 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
RC3H1Q5TC82 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
RC3H1Q5TC82 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC25.84■■□□□ 1.73
RC3H1Q5TC82 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
RC3H1Q5TC82 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
RC3H1Q5TC82 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC25.84■■□□□ 1.73
RC3H1Q5TC82 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
RC3H1Q5TC82 NT5C-211ENST00000582170 653 ntTSL 3 BASIC25.84■■□□□ 1.73
RC3H1Q5TC82 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
RC3H1Q5TC82 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
RC3H1Q5TC82 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 RBM17P1-201ENST00000453646 1190 ntBASIC25.83■■□□□ 1.73
RC3H1Q5TC82 NUDT16P1-203ENST00000513809 620 ntBASIC25.83■■□□□ 1.73
RC3H1Q5TC82 P4HB-223ENST00000576390 439 ntTSL 4 BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC25.83■■□□□ 1.73
RC3H1Q5TC82 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
RC3H1Q5TC82 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC25.83■■□□□ 1.72
RC3H1Q5TC82 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
RC3H1Q5TC82 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms