Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 TPRG1LP1-201ENST00000598702 760 ntBASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 TBCB-214ENST00000629269 413 ntTSL 5 BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 MPST-204ENST00000404393 1329 ntTSL 5 BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 SMUG1P1-201ENST00000590640 811 ntBASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 ADM-207ENST00000530439 1839 ntTSL 2 BASIC16.8■□□□□ 0.28
PDLIM3Q53GG5 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 PLK5-205ENST00000642079 1969 ntBASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 POU5F1P3-201ENST00000428824 1078 ntBASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 TSPY6P-201ENST00000448518 926 ntBASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 AC011767.1-201ENST00000617410 1153 ntBASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC16.79■□□□□ 0.28
PDLIM3Q53GG5 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 AC083906.2-201ENST00000511578 360 ntBASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms