Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 KRT17P1-201ENST00000399211 1546 ntBASIC23.61■■□□□ 1.37
CCDC144BQ3MJ40 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC144BQ3MJ40 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC144BQ3MJ40 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC144BQ3MJ40 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
CCDC144BQ3MJ40 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
CCDC144BQ3MJ40 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.61■■□□□ 1.37
CCDC144BQ3MJ40 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC23.61■■□□□ 1.37
CCDC144BQ3MJ40 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC23.61■■□□□ 1.37
CCDC144BQ3MJ40 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC23.61■■□□□ 1.37
CCDC144BQ3MJ40 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC144BQ3MJ40 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 AL158047.1-201ENST00000445918 881 ntBASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 AP006294.2-201ENST00000641667 209 ntBASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 FEM1AP1-201ENST00000431297 1995 ntBASIC23.6■■□□□ 1.37
CCDC144BQ3MJ40 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC144BQ3MJ40 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC144BQ3MJ40 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC23.59■■□□□ 1.37
CCDC144BQ3MJ40 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC23.59■■□□□ 1.37
CCDC144BQ3MJ40 GATS-209ENST00000454084 1030 ntTSL 3 BASIC23.59■■□□□ 1.37
CCDC144BQ3MJ40 AC026366.1-201ENST00000488803 879 ntBASIC23.59■■□□□ 1.37
CCDC144BQ3MJ40 FAM21FP-204ENST00000608637 956 ntBASIC23.59■■□□□ 1.37
CCDC144BQ3MJ40 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC144BQ3MJ40 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC144BQ3MJ40 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC144BQ3MJ40 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.59■■□□□ 1.37
CCDC144BQ3MJ40 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC144BQ3MJ40 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC23.58■■□□□ 1.37
CCDC144BQ3MJ40 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC144BQ3MJ40 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC144BQ3MJ40 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC144BQ3MJ40 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC23.58■■□□□ 1.37
CCDC144BQ3MJ40 AC142381.4-202ENST00000563973 229 ntBASIC23.58■■□□□ 1.37
CCDC144BQ3MJ40 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC144BQ3MJ40 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC144BQ3MJ40 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC144BQ3MJ40 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC144BQ3MJ40 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC23.57■■□□□ 1.36
CCDC144BQ3MJ40 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC23.57■■□□□ 1.36
CCDC144BQ3MJ40 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC144BQ3MJ40 MMD2-204ENST00000612910 778 ntTSL 5 BASIC23.57■■□□□ 1.36
CCDC144BQ3MJ40 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC144BQ3MJ40 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC23.57■■□□□ 1.36
CCDC144BQ3MJ40 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC144BQ3MJ40 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC144BQ3MJ40 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC144BQ3MJ40 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC144BQ3MJ40 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC144BQ3MJ40 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.56■■□□□ 1.36
CCDC144BQ3MJ40 AP003097.1-201ENST00000530657 1135 ntBASIC23.56■■□□□ 1.36
CCDC144BQ3MJ40 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC23.56■■□□□ 1.36
CCDC144BQ3MJ40 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
CCDC144BQ3MJ40 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC144BQ3MJ40 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 DYM-203ENST00000442713 2147 ntTSL 2 BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 AC245052.3-201ENST00000450182 901 ntBASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 CYP2T3P-201ENST00000601990 817 ntBASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC23.55■■□□□ 1.36
CCDC144BQ3MJ40 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms