Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
HSPG2P98160 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HSPG2P98160 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
HSPG2P98160 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
HSPG2P98160 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC12.77□□□□□ -0.36
HSPG2P98160 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
HSPG2P98160 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC12.77□□□□□ -0.36
HSPG2P98160 ATP5G1P1-201ENST00000448724 379 ntBASIC12.77□□□□□ -0.36
HSPG2P98160 AC091390.4-202ENST00000476426 537 ntBASIC12.77□□□□□ -0.36
HSPG2P98160 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC12.77□□□□□ -0.36
HSPG2P98160 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC12.77□□□□□ -0.36
HSPG2P98160 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
HSPG2P98160 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
HSPG2P98160 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HSPG2P98160 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
HSPG2P98160 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HSPG2P98160 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
HSPG2P98160 RER1-204ENST00000378518 522 ntTSL 3 BASIC12.77□□□□□ -0.37
HSPG2P98160 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC12.77□□□□□ -0.37
HSPG2P98160 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC12.77□□□□□ -0.37
HSPG2P98160 AC093458.2-201ENST00000623150 629 ntBASIC12.77□□□□□ -0.37
HSPG2P98160 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
HSPG2P98160 AC026471.6-201ENST00000622954 1905 ntBASIC12.77□□□□□ -0.37
HSPG2P98160 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HSPG2P98160 AC068473.5-201ENST00000616428 2072 ntBASIC12.77□□□□□ -0.37
HSPG2P98160 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC12.77□□□□□ -0.37
HSPG2P98160 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC12.77□□□□□ -0.37
HSPG2P98160 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HSPG2P98160 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC12.77□□□□□ -0.37
HSPG2P98160 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
HSPG2P98160 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HSPG2P98160 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HSPG2P98160 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC12.77□□□□□ -0.37
HSPG2P98160 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC12.77□□□□□ -0.37
HSPG2P98160 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
HSPG2P98160 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC12.76□□□□□ -0.37
HSPG2P98160 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HSPG2P98160 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC12.76□□□□□ -0.37
HSPG2P98160 AL671883.3-201ENST00000603274 991 ntBASIC12.76□□□□□ -0.37
HSPG2P98160 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC12.76□□□□□ -0.37
HSPG2P98160 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC12.76□□□□□ -0.37
HSPG2P98160 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HSPG2P98160 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC12.76□□□□□ -0.37
HSPG2P98160 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 NARF-205ENST00000412079 1760 ntTSL 5 BASIC12.76□□□□□ -0.37
HSPG2P98160 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
HSPG2P98160 AC023511.2-201ENST00000618803 211 ntBASIC12.76□□□□□ -0.37
HSPG2P98160 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HSPG2P98160 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC12.76□□□□□ -0.37
HSPG2P98160 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC12.75□□□□□ -0.37
HSPG2P98160 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
HSPG2P98160 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 TSPY14P-201ENST00000303979 915 ntBASIC12.75□□□□□ -0.37
HSPG2P98160 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC12.75□□□□□ -0.37
HSPG2P98160 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC12.75□□□□□ -0.37
HSPG2P98160 PP7080-204ENST00000510714 601 ntTSL 3 BASIC12.75□□□□□ -0.37
HSPG2P98160 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC12.75□□□□□ -0.37
HSPG2P98160 AL138966.2-201ENST00000621997 464 ntBASIC12.75□□□□□ -0.37
HSPG2P98160 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC12.75□□□□□ -0.37
HSPG2P98160 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
HSPG2P98160 CD81-212ENST00000526072 1172 ntTSL 5 BASIC12.75□□□□□ -0.37
HSPG2P98160 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
HSPG2P98160 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 FAM207BP-201ENST00000447172 505 ntBASIC12.75□□□□□ -0.37
HSPG2P98160 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 AP005242.2-201ENST00000580065 1175 ntBASIC12.75□□□□□ -0.37
HSPG2P98160 AC130371.2-201ENST00000619443 611 ntBASIC12.75□□□□□ -0.37
HSPG2P98160 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HSPG2P98160 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
HSPG2P98160 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC12.75□□□□□ -0.37
HSPG2P98160 AC093323.1-202ENST00000635031 2045 ntBASIC12.75□□□□□ -0.37
HSPG2P98160 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HSPG2P98160 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC12.74□□□□□ -0.37
HSPG2P98160 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HSPG2P98160 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
HSPG2P98160 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC12.74□□□□□ -0.37
HSPG2P98160 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms