Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CX3CL1P78423 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC16.36■□□□□ 0.21
CX3CL1P78423 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 ADM-207ENST00000530439 1839 ntTSL 2 BASIC16.36■□□□□ 0.21
CX3CL1P78423 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC16.36■□□□□ 0.21
CX3CL1P78423 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC16.36■□□□□ 0.21
CX3CL1P78423 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CX3CL1P78423 IKBKGP1-201ENST00000612193 1073 ntBASIC16.36■□□□□ 0.21
CX3CL1P78423 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
CX3CL1P78423 AC013268.1-206ENST00000638368 961 ntBASIC16.36■□□□□ 0.21
CX3CL1P78423 AC112229.1-201ENST00000639295 961 ntBASIC16.36■□□□□ 0.21
CX3CL1P78423 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC16.36■□□□□ 0.21
CX3CL1P78423 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.36■□□□□ 0.21
CX3CL1P78423 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CX3CL1P78423 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
CX3CL1P78423 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CX3CL1P78423 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC16.36■□□□□ 0.21
CX3CL1P78423 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CX3CL1P78423 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
CX3CL1P78423 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CX3CL1P78423 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CX3CL1P78423 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CX3CL1P78423 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CX3CL1P78423 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CX3CL1P78423 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CX3CL1P78423 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CX3CL1P78423 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC16.35■□□□□ 0.21
CX3CL1P78423 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC16.35■□□□□ 0.21
CX3CL1P78423 DUX4L16-201ENST00000555130 1264 ntBASIC16.35■□□□□ 0.21
CX3CL1P78423 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.35■□□□□ 0.21
CX3CL1P78423 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC16.35■□□□□ 0.21
CX3CL1P78423 AC092437.1-201ENST00000624794 1048 ntBASIC16.35■□□□□ 0.21
CX3CL1P78423 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC16.35■□□□□ 0.21
CX3CL1P78423 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CX3CL1P78423 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CX3CL1P78423 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CX3CL1P78423 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CX3CL1P78423 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.35■□□□□ 0.21
CX3CL1P78423 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC16.35■□□□□ 0.21
CX3CL1P78423 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC16.35■□□□□ 0.21
CX3CL1P78423 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CX3CL1P78423 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CX3CL1P78423 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CX3CL1P78423 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC16.35■□□□□ 0.21
CX3CL1P78423 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
CX3CL1P78423 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CX3CL1P78423 AL391422.3-201ENST00000603791 2761 ntBASIC16.34■□□□□ 0.21
CX3CL1P78423 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
CX3CL1P78423 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.34■□□□□ 0.21
CX3CL1P78423 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CX3CL1P78423 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC16.34■□□□□ 0.21
CX3CL1P78423 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CX3CL1P78423 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
CX3CL1P78423 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
CX3CL1P78423 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CX3CL1P78423 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CX3CL1P78423 UQCRFS1P1-201ENST00000435169 820 ntBASIC16.34■□□□□ 0.21
CX3CL1P78423 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CX3CL1P78423 CDV3P1-201ENST00000471403 739 ntBASIC16.34■□□□□ 0.21
CX3CL1P78423 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC16.34■□□□□ 0.21
CX3CL1P78423 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC16.34■□□□□ 0.21
CX3CL1P78423 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC16.34■□□□□ 0.21
CX3CL1P78423 AL591742.1-201ENST00000604433 565 ntBASIC16.34■□□□□ 0.21
CX3CL1P78423 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC16.34■□□□□ 0.21
CX3CL1P78423 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CX3CL1P78423 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC16.34■□□□□ 0.21
CX3CL1P78423 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CX3CL1P78423 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CX3CL1P78423 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC16.34■□□□□ 0.21
CX3CL1P78423 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CX3CL1P78423 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CX3CL1P78423 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CX3CL1P78423 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
CX3CL1P78423 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CX3CL1P78423 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21
CX3CL1P78423 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CX3CL1P78423 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CX3CL1P78423 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CX3CL1P78423 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
CX3CL1P78423 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC16.33■□□□□ 0.2
CX3CL1P78423 AC007322.3-201ENST00000426526 701 ntBASIC16.33■□□□□ 0.2
CX3CL1P78423 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CX3CL1P78423 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms