Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX2P48431 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC17.88■□□□□ 0.45
SOX2P48431 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX2P48431 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX2P48431 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.88■□□□□ 0.45
SOX2P48431 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SOX2P48431 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX2P48431 MIR572-201ENST00000384983 95 ntBASIC17.88■□□□□ 0.45
SOX2P48431 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.88■□□□□ 0.45
SOX2P48431 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC17.88■□□□□ 0.45
SOX2P48431 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC17.88■□□□□ 0.45
SOX2P48431 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SOX2P48431 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.88■□□□□ 0.45
SOX2P48431 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX2P48431 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX2P48431 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX2P48431 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX2P48431 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.88■□□□□ 0.45
SOX2P48431 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX2P48431 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC17.88■□□□□ 0.45
SOX2P48431 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC17.88■□□□□ 0.45
SOX2P48431 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SOX2P48431 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SOX2P48431 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SOX2P48431 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SOX2P48431 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SOX2P48431 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SOX2P48431 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SOX2P48431 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
SOX2P48431 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.87■□□□□ 0.45
SOX2P48431 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC17.87■□□□□ 0.45
SOX2P48431 AC096631.2-201ENST00000436136 790 ntBASIC17.87■□□□□ 0.45
SOX2P48431 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC17.87■□□□□ 0.45
SOX2P48431 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC17.87■□□□□ 0.45
SOX2P48431 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SOX2P48431 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.87■□□□□ 0.45
SOX2P48431 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SOX2P48431 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SOX2P48431 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.87■□□□□ 0.45
SOX2P48431 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SOX2P48431 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SOX2P48431 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.87■□□□□ 0.45
SOX2P48431 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SOX2P48431 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.87■□□□□ 0.45
SOX2P48431 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SOX2P48431 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SOX2P48431 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SOX2P48431 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.86■□□□□ 0.45
SOX2P48431 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SOX2P48431 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SOX2P48431 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SOX2P48431 AP001330.3-201ENST00000520123 633 ntBASIC17.86■□□□□ 0.45
SOX2P48431 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.86■□□□□ 0.45
SOX2P48431 AC131212.1-201ENST00000613771 668 ntBASIC17.86■□□□□ 0.45
SOX2P48431 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SOX2P48431 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SOX2P48431 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SOX2P48431 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SOX2P48431 TCF3P1-201ENST00000423021 1937 ntBASIC17.86■□□□□ 0.45
SOX2P48431 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SOX2P48431 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SOX2P48431 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX2P48431 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX2P48431 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX2P48431 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX2P48431 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SOX2P48431 MPST-204ENST00000404393 1329 ntTSL 5 BASIC17.85■□□□□ 0.45
SOX2P48431 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.85■□□□□ 0.45
SOX2P48431 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX2P48431 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
SOX2P48431 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.85■□□□□ 0.45
SOX2P48431 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.85■□□□□ 0.45
SOX2P48431 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
SOX2P48431 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX2P48431 AC008175.2-201ENST00000612840 297 ntBASIC17.85■□□□□ 0.45
SOX2P48431 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SOX2P48431 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX2P48431 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SOX2P48431 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX2P48431 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.84■□□□□ 0.45
SOX2P48431 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SOX2P48431 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SOX2P48431 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SOX2P48431 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.84■□□□□ 0.45
SOX2P48431 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SOX2P48431 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC17.84■□□□□ 0.45
SOX2P48431 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC17.84■□□□□ 0.45
SOX2P48431 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC17.84■□□□□ 0.45
SOX2P48431 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SOX2P48431 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.84■□□□□ 0.45
SOX2P48431 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SOX2P48431 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SOX2P48431 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SOX2P48431 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
SOX2P48431 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
SOX2P48431 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SOX2P48431 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
SOX2P48431 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SOX2P48431 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SOX2P48431 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.83■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms