Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC16.52■□□□□ 0.23
CDX1P47902 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX1P47902 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX1P47902 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX1P47902 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX1P47902 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CDX1P47902 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX1P47902 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.51■□□□□ 0.23
CDX1P47902 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CDX1P47902 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX1P47902 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDX1P47902 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC16.51■□□□□ 0.23
CDX1P47902 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX1P47902 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDX1P47902 WWOX-218ENST00000627394 894 ntTSL 5 BASIC16.51■□□□□ 0.23
CDX1P47902 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX1P47902 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX1P47902 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC16.51■□□□□ 0.23
CDX1P47902 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDX1P47902 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX1P47902 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC16.5■□□□□ 0.23
CDX1P47902 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC16.5■□□□□ 0.23
CDX1P47902 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC16.5■□□□□ 0.23
CDX1P47902 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CDX1P47902 FEM1AP4-201ENST00000443167 1987 ntBASIC16.5■□□□□ 0.23
CDX1P47902 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC16.5■□□□□ 0.23
CDX1P47902 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 SERP1-208ENST00000491660 830 ntTSL 2 BASIC16.5■□□□□ 0.23
CDX1P47902 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC16.5■□□□□ 0.23
CDX1P47902 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC16.5■□□□□ 0.23
CDX1P47902 AC138907.5-202ENST00000569484 235 ntBASIC16.5■□□□□ 0.23
CDX1P47902 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC16.5■□□□□ 0.23
CDX1P47902 AC053503.5-201ENST00000601508 636 ntBASIC16.5■□□□□ 0.23
CDX1P47902 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC16.5■□□□□ 0.23
CDX1P47902 BID-214ENST00000617586 542 ntTSL 5 BASIC16.5■□□□□ 0.23
CDX1P47902 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC16.5■□□□□ 0.23
CDX1P47902 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC16.5■□□□□ 0.23
CDX1P47902 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CDX1P47902 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX1P47902 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC16.5■□□□□ 0.23
CDX1P47902 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CDX1P47902 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16.49■□□□□ 0.23
CDX1P47902 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 AC090192.1-201ENST00000517740 490 ntBASIC16.49■□□□□ 0.23
CDX1P47902 KRT18P20-201ENST00000548986 1279 ntBASIC16.49■□□□□ 0.23
CDX1P47902 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC16.49■□□□□ 0.23
CDX1P47902 EEF1DP3-203ENST00000566025 782 ntBASIC16.49■□□□□ 0.23
CDX1P47902 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC16.49■□□□□ 0.23
CDX1P47902 AP001160.3-201ENST00000601484 763 ntBASIC16.49■□□□□ 0.23
CDX1P47902 AC080038.1-201ENST00000611274 1154 ntBASIC16.49■□□□□ 0.23
CDX1P47902 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.49■□□□□ 0.23
CDX1P47902 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CDX1P47902 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDX1P47902 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CDX1P47902 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CDX1P47902 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC16.48■□□□□ 0.23
CDX1P47902 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC16.48■□□□□ 0.23
CDX1P47902 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
CDX1P47902 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
CDX1P47902 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC16.48■□□□□ 0.23
CDX1P47902 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 METTL26-203ENST00000397664 604 ntTSL 2 BASIC16.48■□□□□ 0.23
CDX1P47902 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC16.48■□□□□ 0.23
CDX1P47902 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
CDX1P47902 SPI1-203ENST00000533030 661 ntTSL 2 BASIC16.48■□□□□ 0.23
CDX1P47902 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC16.48■□□□□ 0.23
CDX1P47902 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms