Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CNOT4O95628 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.07■□□□□ 0.48
CNOT4O95628 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CNOT4O95628 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.06■□□□□ 0.48
CNOT4O95628 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CNOT4O95628 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.06■□□□□ 0.48
CNOT4O95628 AL024507.2-201ENST00000606070 2574 ntBASIC18.06■□□□□ 0.48
CNOT4O95628 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CNOT4O95628 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CNOT4O95628 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CNOT4O95628 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CNOT4O95628 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.06■□□□□ 0.48
CNOT4O95628 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CNOT4O95628 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.06■□□□□ 0.48
CNOT4O95628 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.06■□□□□ 0.48
CNOT4O95628 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.06■□□□□ 0.48
CNOT4O95628 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.06■□□□□ 0.48
CNOT4O95628 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CNOT4O95628 AC097658.1-201ENST00000475555 843 ntBASIC18.06■□□□□ 0.48
CNOT4O95628 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.06■□□□□ 0.48
CNOT4O95628 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.06■□□□□ 0.48
CNOT4O95628 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.06■□□□□ 0.48
CNOT4O95628 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CNOT4O95628 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CNOT4O95628 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CNOT4O95628 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.06■□□□□ 0.48
CNOT4O95628 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.06■□□□□ 0.48
CNOT4O95628 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CNOT4O95628 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CNOT4O95628 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CNOT4O95628 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.06■□□□□ 0.48
CNOT4O95628 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
CNOT4O95628 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CNOT4O95628 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CNOT4O95628 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CNOT4O95628 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.05■□□□□ 0.48
CNOT4O95628 AC008687.6-201ENST00000596318 630 ntBASIC18.05■□□□□ 0.48
CNOT4O95628 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CNOT4O95628 MYC-209ENST00000641252 345 ntBASIC18.05■□□□□ 0.48
CNOT4O95628 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CNOT4O95628 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.05■□□□□ 0.48
CNOT4O95628 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.05■□□□□ 0.48
CNOT4O95628 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.05■□□□□ 0.48
CNOT4O95628 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CNOT4O95628 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CNOT4O95628 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 FEM1AP4-201ENST00000443167 1987 ntBASIC18.04■□□□□ 0.48
CNOT4O95628 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.04■□□□□ 0.48
CNOT4O95628 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.04■□□□□ 0.48
CNOT4O95628 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.04■□□□□ 0.48
CNOT4O95628 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CNOT4O95628 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.04■□□□□ 0.48
CNOT4O95628 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.04■□□□□ 0.48
CNOT4O95628 AC091874.3-201ENST00000512672 1195 ntBASIC18.04■□□□□ 0.48
CNOT4O95628 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.04■□□□□ 0.48
CNOT4O95628 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CNOT4O95628 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.04■□□□□ 0.48
CNOT4O95628 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CNOT4O95628 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CNOT4O95628 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
CNOT4O95628 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CNOT4O95628 AL137060.1-201ENST00000618151 2648 ntBASIC18.03■□□□□ 0.48
CNOT4O95628 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CNOT4O95628 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CNOT4O95628 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CNOT4O95628 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CNOT4O95628 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CNOT4O95628 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CNOT4O95628 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.03■□□□□ 0.48
CNOT4O95628 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.03■□□□□ 0.48
CNOT4O95628 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.03■□□□□ 0.48
CNOT4O95628 KRT18P29-201ENST00000397031 1267 ntBASIC18.03■□□□□ 0.48
CNOT4O95628 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms