Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 GCSHP5-201ENST00000443090 522 ntBASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 C2orf69P4-201ENST00000565394 541 ntBASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 LINC00565-201ENST00000562710 2331 ntBASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 AC142381.4-202ENST00000563973 229 ntBASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 AC008403.3-201ENST00000598924 454 ntBASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC16.61■□□□□ 0.25
TRAV40A0A0B4J280 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 UNC93B4-201ENST00000505679 747 ntBASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV40A0A0B4J280 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 AL024507.2-201ENST00000606070 2574 ntBASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 AC011484.1-201ENST00000377652 1995 ntBASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 SLC29A4P2-201ENST00000504749 1089 ntBASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
TRAV40A0A0B4J280 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
TRAV40A0A0B4J280 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TRAV40A0A0B4J280 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TRAV40A0A0B4J280 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TRAV40A0A0B4J280 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
TRAV40A0A0B4J280 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV40A0A0B4J280 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV40A0A0B4J280 KRT17P3-201ENST00000420566 1262 ntBASIC16.58■□□□□ 0.24
TRAV40A0A0B4J280 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC16.58■□□□□ 0.24
TRAV40A0A0B4J280 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.58■□□□□ 0.24
TRAV40A0A0B4J280 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAV40A0A0B4J280 BRWD1-AS2-201ENST00000603064 1028 ntBASIC16.58■□□□□ 0.24
TRAV40A0A0B4J280 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV40A0A0B4J280 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV40A0A0B4J280 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV40A0A0B4J280 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAV40A0A0B4J280 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV40A0A0B4J280 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms