Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC39.02■■■■□ 3.84
SHROOM4Q9ULL8 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC39.02■■■■□ 3.84
SHROOM4Q9ULL8 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC39.02■■■■□ 3.84
SHROOM4Q9ULL8 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC39.01■■■■□ 3.84
SHROOM4Q9ULL8 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC39.01■■■■□ 3.84
SHROOM4Q9ULL8 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC39.01■■■■□ 3.84
SHROOM4Q9ULL8 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC39.01■■■■□ 3.84
SHROOM4Q9ULL8 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC39.01■■■■□ 3.84
SHROOM4Q9ULL8 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC39.01■■■■□ 3.83
SHROOM4Q9ULL8 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC39.01■■■■□ 3.83
SHROOM4Q9ULL8 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC39.01■■■■□ 3.83
SHROOM4Q9ULL8 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC39■■■■□ 3.83
SHROOM4Q9ULL8 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC39■■■■□ 3.83
SHROOM4Q9ULL8 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC39■■■■□ 3.83
SHROOM4Q9ULL8 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC39■■■■□ 3.83
SHROOM4Q9ULL8 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC39■■■■□ 3.83
SHROOM4Q9ULL8 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC39■■■■□ 3.83
SHROOM4Q9ULL8 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC39■■■■□ 3.83
SHROOM4Q9ULL8 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC38.99■■■■□ 3.83
SHROOM4Q9ULL8 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC38.99■■■■□ 3.83
SHROOM4Q9ULL8 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC38.99■■■■□ 3.83
SHROOM4Q9ULL8 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC38.99■■■■□ 3.83
SHROOM4Q9ULL8 RNF146-204ENST00000476956 884 ntTSL 2 BASIC38.99■■■■□ 3.83
SHROOM4Q9ULL8 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC38.99■■■■□ 3.83
SHROOM4Q9ULL8 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC38.99■■■■□ 3.83
SHROOM4Q9ULL8 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC38.99■■■■□ 3.83
SHROOM4Q9ULL8 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC38.99■■■■□ 3.83
SHROOM4Q9ULL8 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC38.99■■■■□ 3.83
SHROOM4Q9ULL8 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 CYP21A1P-202ENST00000354927 1481 ntBASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 P4HB-223ENST00000576390 439 ntTSL 4 BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 PALM-207ENST00000590161 2137 ntTSL 4 BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC38.98■■■■□ 3.83
SHROOM4Q9ULL8 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 AC110285.5-201ENST00000611501 352 ntBASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC38.97■■■■□ 3.83
SHROOM4Q9ULL8 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC38.96■■■■□ 3.83
SHROOM4Q9ULL8 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC38.96■■■■□ 3.83
SHROOM4Q9ULL8 KRT18P68-201ENST00000392293 1000 ntBASIC38.96■■■■□ 3.83
SHROOM4Q9ULL8 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC38.96■■■■□ 3.83
SHROOM4Q9ULL8 AL590326.2-201ENST00000625139 305 ntBASIC38.96■■■■□ 3.83
SHROOM4Q9ULL8 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC38.96■■■■□ 3.83
SHROOM4Q9ULL8 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC38.96■■■■□ 3.83
SHROOM4Q9ULL8 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC38.96■■■■□ 3.83
SHROOM4Q9ULL8 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 PRKY-204ENST00000533551 1019 ntBASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 AC145285.6-201ENST00000604632 637 ntBASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC38.95■■■■□ 3.83
SHROOM4Q9ULL8 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC38.94■■■■□ 3.82
SHROOM4Q9ULL8 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC38.94■■■■□ 3.82
SHROOM4Q9ULL8 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC38.94■■■■□ 3.82
SHROOM4Q9ULL8 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC38.94■■■■□ 3.82
SHROOM4Q9ULL8 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC38.94■■■■□ 3.82
SHROOM4Q9ULL8 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC38.94■■■■□ 3.82
SHROOM4Q9ULL8 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC38.94■■■■□ 3.82
SHROOM4Q9ULL8 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC38.94■■■■□ 3.82
SHROOM4Q9ULL8 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC38.94■■■■□ 3.82
SHROOM4Q9ULL8 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC38.94■■■■□ 3.82
SHROOM4Q9ULL8 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC38.94■■■■□ 3.82
SHROOM4Q9ULL8 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC38.93■■■■□ 3.82
SHROOM4Q9ULL8 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC38.93■■■■□ 3.82
SHROOM4Q9ULL8 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC38.93■■■■□ 3.82
SHROOM4Q9ULL8 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC38.93■■■■□ 3.82
SHROOM4Q9ULL8 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC38.93■■■■□ 3.82
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms