Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 AC008694.1-202ENST00000636953 945 ntBASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
SMC4Q9NTJ3 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.79
SMC4Q9NTJ3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC26.2■■□□□ 1.79
SMC4Q9NTJ3 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC26.2■■□□□ 1.79
SMC4Q9NTJ3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
SMC4Q9NTJ3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
SMC4Q9NTJ3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
SMC4Q9NTJ3 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SMC4Q9NTJ3 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SMC4Q9NTJ3 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SMC4Q9NTJ3 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
SMC4Q9NTJ3 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC26.2■■□□□ 1.78
SMC4Q9NTJ3 AC093787.1-201ENST00000450396 207 ntBASIC26.2■■□□□ 1.78
SMC4Q9NTJ3 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC26.2■■□□□ 1.78
SMC4Q9NTJ3 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SMC4Q9NTJ3 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.78
SMC4Q9NTJ3 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC26.2■■□□□ 1.78
SMC4Q9NTJ3 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 AC087633.2-202ENST00000565166 1439 ntBASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
SMC4Q9NTJ3 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 OR10C1-204ENST00000622521 1039 ntBASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SMC4Q9NTJ3 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SMC4Q9NTJ3 KRT8P36-201ENST00000489121 1440 ntBASIC26.17■■□□□ 1.78
SMC4Q9NTJ3 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC26.17■■□□□ 1.78
SMC4Q9NTJ3 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC26.17■■□□□ 1.78
SMC4Q9NTJ3 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SMC4Q9NTJ3 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC26.17■■□□□ 1.78
SMC4Q9NTJ3 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SMC4Q9NTJ3 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SMC4Q9NTJ3 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SMC4Q9NTJ3 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SMC4Q9NTJ3 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SMC4Q9NTJ3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC26.17■■□□□ 1.78
SMC4Q9NTJ3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 AC020907.5-201ENST00000624372 1936 ntBASIC26.16■■□□□ 1.78
SMC4Q9NTJ3 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SMC4Q9NTJ3 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
SMC4Q9NTJ3 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC26.15■■□□□ 1.78
SMC4Q9NTJ3 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SMC4Q9NTJ3 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC26.15■■□□□ 1.78
SMC4Q9NTJ3 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SMC4Q9NTJ3 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SMC4Q9NTJ3 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC26.15■■□□□ 1.78
SMC4Q9NTJ3 MCRIP2P1-201ENST00000394346 511 ntBASIC26.15■■□□□ 1.78
SMC4Q9NTJ3 AL355472.2-201ENST00000422958 438 ntBASIC26.15■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms