Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CDT1Q9H211 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC22.17■■□□□ 1.14
CDT1Q9H211 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDT1Q9H211 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC22.17■■□□□ 1.14
CDT1Q9H211 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC22.17■■□□□ 1.14
CDT1Q9H211 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CDT1Q9H211 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC22.17■■□□□ 1.14
CDT1Q9H211 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CDT1Q9H211 HLA-B-256ENST00000639848 1089 ntBASIC22.17■■□□□ 1.14
CDT1Q9H211 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDT1Q9H211 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDT1Q9H211 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDT1Q9H211 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC22.17■■□□□ 1.14
CDT1Q9H211 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDT1Q9H211 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDT1Q9H211 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDT1Q9H211 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC22.16■■□□□ 1.14
CDT1Q9H211 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC22.16■■□□□ 1.14
CDT1Q9H211 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC22.16■■□□□ 1.14
CDT1Q9H211 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC22.16■■□□□ 1.14
CDT1Q9H211 AC060766.5-201ENST00000590539 871 ntBASIC22.16■■□□□ 1.14
CDT1Q9H211 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDT1Q9H211 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDT1Q9H211 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CDT1Q9H211 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CDT1Q9H211 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
CDT1Q9H211 AC006128.1-201ENST00000624704 1661 ntBASIC22.16■■□□□ 1.14
CDT1Q9H211 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CDT1Q9H211 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
CDT1Q9H211 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC22.16■■□□□ 1.14
CDT1Q9H211 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDT1Q9H211 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CDT1Q9H211 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
CDT1Q9H211 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CDT1Q9H211 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CDT1Q9H211 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CDT1Q9H211 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC22.15■■□□□ 1.14
CDT1Q9H211 GAS7-202ENST00000396115 929 ntTSL 5 BASIC22.15■■□□□ 1.14
CDT1Q9H211 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC22.15■■□□□ 1.14
CDT1Q9H211 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC22.15■■□□□ 1.14
CDT1Q9H211 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CDT1Q9H211 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC22.15■■□□□ 1.14
CDT1Q9H211 STK25-205ENST00000405883 1904 ntTSL 2 BASIC22.15■■□□□ 1.14
CDT1Q9H211 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.15■■□□□ 1.14
CDT1Q9H211 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CDT1Q9H211 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CDT1Q9H211 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
CDT1Q9H211 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CDT1Q9H211 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC22.14■■□□□ 1.13
CDT1Q9H211 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDT1Q9H211 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDT1Q9H211 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
CDT1Q9H211 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC22.14■■□□□ 1.13
CDT1Q9H211 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC22.14■■□□□ 1.13
CDT1Q9H211 AL121603.2-201ENST00000557373 2117 ntBASIC22.14■■□□□ 1.13
CDT1Q9H211 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CDT1Q9H211 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC22.14■■□□□ 1.13
CDT1Q9H211 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDT1Q9H211 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDT1Q9H211 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC22.14■■□□□ 1.13
CDT1Q9H211 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDT1Q9H211 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDT1Q9H211 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDT1Q9H211 CRK-204ENST00000574295 1391 ntTSL 5 BASIC22.13■■□□□ 1.13
CDT1Q9H211 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDT1Q9H211 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDT1Q9H211 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
CDT1Q9H211 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC22.13■■□□□ 1.13
CDT1Q9H211 UNC93B5-201ENST00000530315 699 ntBASIC22.13■■□□□ 1.13
CDT1Q9H211 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC22.13■■□□□ 1.13
CDT1Q9H211 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC22.13■■□□□ 1.13
CDT1Q9H211 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CDT1Q9H211 BRWD1-AS2-201ENST00000603064 1028 ntBASIC22.13■■□□□ 1.13
CDT1Q9H211 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
CDT1Q9H211 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
CDT1Q9H211 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDT1Q9H211 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC22.13■■□□□ 1.13
CDT1Q9H211 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CDT1Q9H211 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
CDT1Q9H211 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CDT1Q9H211 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC22.12■■□□□ 1.13
CDT1Q9H211 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CDT1Q9H211 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CDT1Q9H211 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CDT1Q9H211 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CDT1Q9H211 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CDT1Q9H211 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CDT1Q9H211 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
CDT1Q9H211 POU5F1P3-201ENST00000428824 1078 ntBASIC22.12■■□□□ 1.13
CDT1Q9H211 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC22.12■■□□□ 1.13
CDT1Q9H211 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC22.12■■□□□ 1.13
CDT1Q9H211 PNMA6B-201ENST00000538162 1200 ntBASIC22.12■■□□□ 1.13
CDT1Q9H211 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
CDT1Q9H211 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CDT1Q9H211 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CDT1Q9H211 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC22.12■■□□□ 1.13
CDT1Q9H211 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC22.12■■□□□ 1.13
CDT1Q9H211 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC22.12■■□□□ 1.13
CDT1Q9H211 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC22.12■■□□□ 1.13
CDT1Q9H211 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms